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cci

cell cell interaction run2.sh add bn run1 run3 no bn

final version dataset: train_dataset4: train_dataset3:

mousev1.pth: precision:0.8 recall:0.7 python ./code/train_mammary.py --dataset 1189 --train_dataset train_dataset2_fake --test_dataset test_dataset2_fake
--tissue small_intestine --gpu 0
--dense_dim 400
--hidden_dim 200
--lr 1e-6
--n_epochs 10000
--batch_size 32
--dropout 0.1
--loss_weight 1
--n_layers 1
--pretrained_model_path checkpoints/mousev1.pth
--load_pretrained_model 1
--save_model_path checkpoints/mousev1.pth

train_dataset: junk are randomly chosen. train_dataset2: 选择负样本,基因交叉后,随机选取共同基因最少5个细胞中的一个 train_dataset3: 选择负样本,基因交叉后,随机选取共同基因最少5个细胞中的一个 和2的cluster不一样 train_dataset2_3: 只选了1个基因最少的细胞,所以有很多0

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cci for PPP datasets

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