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cp_apr_linear.py
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cp_apr_linear.py
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'''
Compute the nonnegative tensor factorization using alternating Poisson regression
'''
import time
import ktensor
from numpy import *
import tensorTools
def solveForModeB0(X, M, n, maxInner, epsilon, tol):
"""
Solve for the subproblem B = argmin (B >= 0) f(M)
Parameters
----------
X : the original tensor
M : the current CP factorization
n : the mode that we are trying to solve the subproblem for
epsilon : parameter to avoid dividing by zero
tol : the convergence tolerance (to
Returns
-------
M : the updated CP factorization
Phi : the last Phi(n) value
iter : the number of iterations before convergence / maximum
kktModeViolation : the maximum value of min(B(n), E - Phi(n))
"""
# Pi(n) = [A(N) kr A(N-1) kr ... A(n+1) kr A(n-1) kr .. A(1)]^T
Pi = tensorTools.calculatePi(X, M, n)
#print(M.U[n])
for iter in range(maxInner):
# Phi = (X(n) elem-div (B Pi)) Pi^T
Phi = tensorTools.calculatePhi(X, M.U[n], Pi, n, epsilon=epsilon)
#print(Phi)
# check for convergence that min(B(n), E - Phi(n)) = 0 [or close]
kktModeViolation = np.max(np.abs(np.minimum(M.U[n], 1-Phi).flatten()))
if (kktModeViolation < tol):
break
# Do the multiplicative update
M.U[n] = np.multiply(M.U[n],Phi)
#print(" Mode={0}, Inner Iter={1}, KKT violation={2}".format(n, iter, kktModeViolation))
return M, Phi, iter, kktModeViolation
def solveForModeB1(X, M, n, maxInner, epsilon, tol,sita,Y1, lambta2):
"""
Solve for the subproblem B = argmin (B >= 0) f(M)
Parameters
----------
X : the original tensor
M : the current CP factorization
n : the mode that we are trying to solve the subproblem for
epsilon : parameter to avoid dividing by zero
tol : the convergence tolerance (to
Returns
-------
M : the updated CP factorization
Phi : the last Phi(n) value
iter : the number of iterations before convergence / maximum
kktModeViolation : the maximum value of min(B(n), E - Phi(n))
DemoU : the updated demographic U matrix
"""
# Pi(n) = [A(N) kr A(N-1) kr ... A(n+1) kr A(n-1) kr .. A(1)]^T
Pi = tensorTools.calculatePi(X, M, n)
#print 'Pi size', Pi.shape
#print 'pi='+str(Pi)
#print(M.U[n])
for iter in range(maxInner):
# Phi = (X(n) elem-div (B Pi)) Pi^T
#print X.vals.shape,X.shape
#print X.vals.flatten().shape
Phi = tensorTools.calculatePhi(X, M.U[n], Pi, n, epsilon=epsilon)
#print('phi'+str(Phi))
#print(Phi)
# check for convergence that min(B(n), E - Phi(n)) = 0 [or close]
kktModeViolation = np.max(np.abs(np.minimum(M.U[n], 1-Phi).flatten()))
if (kktModeViolation < tol):
break
B=M.U[n]
#print B.shape
colNorm = np.apply_along_axis(np.linalg.norm, 0, B, 1)
zeroNorm = np.where(colNorm == 0)[0]
colNorm[zeroNorm] = 1
B = B / colNorm[np.newaxis, :]
tm=np.hstack((np.ones((B.shape[0],1)),B))
Y1=Y1.reshape((Y1.shape[0],1))
derive=-1.0*lambta2/B.shape[0]*np.dot((Y1-np.dot(tm,sita)),sita.T)
#print derive.shape
#print np.multiply(M.U[n],derive[:,1:]).shape
#print np.multiply(M.U[n],Phi).shape
M.U[n] = np.array(np.multiply(M.U[n],Phi))-np.array((np.multiply(M.U[n],derive[:,1:])))
#print 'after'
#print M.U[n][0]
#print(" Mode={0}, Inner Iter={1}, KKT violation={2}".format(n, iter, kktModeViolation))
return M, Phi, iter, kktModeViolation
def __normalize_mode(M, mode, normtype):
"""Normalize the ith factor using the norm specified by normtype"""
colNorm = np.apply_along_axis(np.linalg.norm, 0, M.U[mode], normtype)
zeroNorm = np.where(colNorm == 0)[0]
colNorm[zeroNorm] = 1
llmbda = M.lmbda * colNorm
tempB = M.U[mode] / colNorm[np.newaxis, :]
return llmbda,tempB
def __solveSubproblem0(X, M, n, maxInner, isConverged, epsilon, tol):
""" """
# Shift the weight from lambda to mode n
# B = A(n)*Lambda
M.redistribute(n)
# solve the inner problem
M, Phi, iter, kktModeViolation = solveForModeB0(X, M, n, maxInner, epsilon, tol)
if (iter > 0):
isConverged = False
# Shift weight from mode n back to lambda
M.normalize_mode(n,1)
return M, Phi, iter, kktModeViolation, isConverged
def __solveSubproblem1(X, M, n, maxInner, isConverged, epsilon, tol, sita,Y1, lambta2):
""" """
# Shift the weight from lambda to mode n
# B = A(n)*Lambda
M.redistribute(n)
# solve the inner problem
M, Phi, iter, kktModeViolation = solveForModeB1(X, M, n, maxInner, epsilon, tol,sita,Y1, lambta2)
if (iter > 0):
isConverged = False
# Shift weight from mode n back to lambda
M.normalize_mode(n,1)
return M, Phi, iter, kktModeViolation, isConverged
def __solveLinear(B, Y1,lambta3):
colNorm = np.apply_along_axis(np.linalg.norm, 0, B, 1)
zeroNorm = np.where(colNorm == 0)[0]
colNorm[zeroNorm] = 1
B = B / colNorm[np.newaxis, :]
xMat=mat(np.hstack((np.ones((B.shape[0],1)),B)))
Y1=Y1.reshape((Y1.shape[0],1))
#print Y1.shape
#print 'sita shape'
#print sita.shape
xTx = np.dot(xMat.T,xMat)
I = np.eye(xMat.shape[1])
I[0][0] = 0;#w0 has no punish factor
denom = xTx + I*lambta3
if np.linalg.det(denom) == 0.0:
print "This matrix is singular, cannot do inverse"
#raise()
else:
ws = np.dot(denom.I , (np.dot(xMat.T,Y1)))
return ws
def cp_apr(X, Y1, R, Minit=None, tol=1e-4, maxiters=1000, maxinner=50,
epsilon=1e-10, kappatol=1e-10, kappa=1e-2):
"""
Compute nonnegative CP with alternative Poisson regression.
Code is the python implementation of cp_apr in the MATLAB Tensor Toolbox
Parameters
----------
X : input tensor of the class tensor or sptensor
R : the rank of the CP
lambta1 is the parameter of docomposition of demographic information
lambta4 is the patameter of penalty item of demoU
Minit : the initial guess (in the form of a ktensor), if None random guess
tol : tolerance on the inner KKT violation
maxiters : maximum number of iterations
maxinner : maximum number of inner iterations
epsilon : parameter to avoid dividing by zero
kappatol : tolerance on complementary slackness
kappa : offset to fix complementary slackness
Returns
-------
M : the CP model as a ktensor
cpStats: the statistics for each inner iteration
modelStats: a dictionary item with the final statistics for this tensor factorization
"""
N = X.ndims()
## Random initialization
if Minit == None:
F = tensorTools.randomInit(X.shape, R)
Minit = ktensor.ktensor(np.ones(R), F);
nInnerIters = np.zeros(maxiters);
## Initialize M and Phi for iterations
M = Minit
M.normalize(1)
Phi = [[] for i in range(N)]
kktModeViolations = np.zeros(N)
kktViolations = -np.ones(maxiters)
nViolations = np.zeros(maxiters)
lambda2=0.1
lambda3=0.1
sita=np.random.rand(R+1,1);
## statistics
cpStats = np.zeros(7)
'''
print '!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!'
print M.U[0][1,:]
print M.U[0].shape
print Demog[1]
print DemoU[1]
print '!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!'
'''
for iteration in range(maxiters):
startIter = time.time()
isConverged = True;
for n in range(N):
startMode = time.time()
## Make adjustments to M[n] entries that violate complementary slackness
if iteration > 0:
V = np.logical_and(Phi[n] > 1, M.U[n] < kappatol)
if np.count_nonzero(V) > 0:
nViolations[iteration] = nViolations[iteration] + 1
#print 'V:',V.shape,V.dtype
#print 'M.U[n]',M.U[n].shape,M.U[n].dtype
M.U[n][V > 0] = M.U[n][V > 0] + kappa
if n==0:
sita=__solveLinear(M.U[n],Y1,lambda3)
# lr=LogisticRegression()
#sita=lr.fit(M.U[n],Y1).coef_
#print 'sita'
#print sita
#print 'demoU'
#print DemoU[0]
M, Phi[n], inner, kktModeViolations[n], isConverged = __solveSubproblem1(X, M, n, maxinner, isConverged, epsilon, tol,sita,Y1, lambda2)
else:
M, Phi[n], inner, kktModeViolations[n], isConverged = __solveSubproblem0(X, M, n, maxinner, isConverged, epsilon, tol)
elapsed = time.time() - startMode
# only write the outer iterations for now
#cpStats = np.vstack((cpStats, np.array([iteration, n, inner, tensorTools.lsqrFit(X,M), tensorTools.loglikelihood(X,[M]), kktModeViolations[n], elapsed])))
kktViolations[iteration] = np.max(kktModeViolations)
elapsed = time.time()-startIter
#cpStats = np.vstack((cpStats, np.array([iter, -1, -1, kktViolations[iter], __loglikelihood(X,M), elapsed])))
print("Iteration {0}: Inner Its={1} with KKT violation={2}, nViolations={3}, and elapsed time={4}".format(iteration, nInnerIters[iteration], kktViolations[iteration], nViolations[iteration], elapsed))
if isConverged:
break
cpStats = np.delete(cpStats, (0), axis=0) # delete the first row which was superfluous
### Print the statistics
#fit = tensorTools.lsqrFit(X,M)
#ll = tensorTools.loglikelihood(X,[M])
print("Number of iterations = {0}".format(iteration))
#print("Final least squares fit = {0}".format(fit))
#print("Final log-likelihood = {0}".format(ll))
print("Final KKT Violation = {0}".format(kktViolations[iteration]))
print("Total inner iterations = {0}".format(np.sum(nInnerIters)))
#modelStats = {"Iters" : iter, "LS" : fit, "LL" : ll, "KKT" : kktViolations[iteration]}
return M, cpStats