GitHub - yuzhenpeng/NGS: Scripts for next generation sequencing

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 264 Commits
AS		AS
test_dir		test_dir
trash		trash
.overlappedRegionsAmongMultipleSamples.py.swp		.overlappedRegionsAmongMultipleSamples.py.swp
AtannoByLocus.py		AtannoByLocus.py
DESeq2.indev.sh		DESeq2.indev.sh
DESeq2.ori.sh		DESeq2.ori.sh
DESeq2.sh		DESeq2.sh
DEXSeq.sh		DEXSeq.sh
DE_analysis.pl		DE_analysis.pl
DMR.sh		DMR.sh
GEO_upload.sh		GEO_upload.sh
P450_clan_family_anno.py		P450_clan_family_anno.py
addExtraColumn.py		addExtraColumn.py
affy_deGenes.sh		affy_deGenes.sh
affy_full.sh		affy_full.sh
afterBlastParse.py		afterBlastParse.py
afterRunGOseq.py		afterRunGOseq.py
afteredgeRanalyze_diffexpr.py		afteredgeRanalyze_diffexpr.py
airflowDagGen.py		airflowDagGen.py
alignIsoformers.py		alignIsoformers.py
alphabetCnt.py		alphabetCnt.py
analyzeFimo.py		analyzeFimo.py
animalMiRNATargetPredict.py		animalMiRNATargetPredict.py
animalMiRNATargetPredict2.py		animalMiRNATargetPredict2.py
animalMiRNATargetSite.py		animalMiRNATargetSite.py
annoGroupUseEnsembl.py		annoGroupUseEnsembl.py
annoscriptConfig.sh		annoscriptConfig.sh
aracyc.py		aracyc.py
asType.py		asType.py
ascp.py		ascp.py
batchTcoffee.py		batchTcoffee.py
bdgToWig.py		bdgToWig.py
bed12Tobed6.py		bed12Tobed6.py
bedCovrageUseWig.py		bedCovrageUseWig.py
bedCovrageUseWig.readBedIn.py		bedCovrageUseWig.readBedIn.py
bedToWig.py		bedToWig.py
bedgraphToWig.py		bedgraphToWig.py
bedtools_genomecov.py		bedtools_genomecov.py
bfkmp.py		bfkmp.py
biclusterDraw.py		biclusterDraw.py
biclusterExtractGeneClass.py		biclusterExtractGeneClass.py
binRegionForCovRpkm.py		binRegionForCovRpkm.py
binRegions.py		binRegions.py
binRegions2.py		binRegions2.py
binTranscriptome.py		binTranscriptome.py
binmRNARegions.py		binmRNARegions.py
biogrid.extract.py		biogrid.extract.py
blast.py		blast.py
blastParse.old.py		blastParse.old.py
blastParse.py		blastParse.py
bookdown_init.py		bookdown_init.py
bookdown_init_general.py		bookdown_init_general.py
bowtiemap.sh		bowtiemap.sh
boxplot.new.py		boxplot.new.py
boxplot.py		boxplot.py
browserMimic.py		browserMimic.py
bwamap.sh		bwamap.sh
cat.py		cat.py
ceasDumpClassify.py		ceasDumpClassify.py
cellnet.sh		cellnet.sh
chebi.search.py		chebi.search.py
checkCol.sh		checkCol.sh
chip-seq.flow.py		chip-seq.flow.py
chipSamDeleteSamePos.py		chipSamDeleteSamePos.py
clan.py		clan.py
clipAdaptor.py		clipAdaptor.py
clusterProfile.sh		clusterProfile.sh
coLinearAnalysisForFindMotifResult.py		coLinearAnalysisForFindMotifResult.py
codonStatistics.py		codonStatistics.py
codonUsage.py		codonUsage.py
collapseByCol.py		collapseByCol.py
collapseBySTring.py		collapseBySTring.py
collapseFilesByMain.py		collapseFilesByMain.py
collapseFindMotifsResult.py		collapseFindMotifsResult.py
collapsemiRNAreads.py		collapsemiRNAreads.py
combineEncodeData.py		combineEncodeData.py
combinePSINRRepWithLowerFilter.py		combinePSINRRepWithLowerFilter.py
compRefGeneRefFlat.bugged_unfinished.py		compRefGeneRefFlat.bugged_unfinished.py
compRefGeneRefFlatBed12.py		compRefGeneRefFlatBed12.py
computeStatPandaMatrix.py		computeStatPandaMatrix.py
concantenateFasta.py		concantenateFasta.py
contingencyTableCntTest.sh		contingencyTableCntTest.sh
convalign.py		convalign.py
correCoefficientMatrix.sh		correCoefficientMatrix.sh
correctTophatOutput.sh		correctTophatOutput.sh
countChar.py		countChar.py
countCharacterByLine.py		countCharacterByLine.py
countCpG_CHH_CHG.py		countCpG_CHH_CHG.py
countReadsOfSamPE.py		countReadsOfSamPE.py
cpgCountPercent.py		cpgCountPercent.py
creatReadme.py		creatReadme.py
creatReadmeBak.py		creatReadmeBak.py
ctAssist.py		ctAssist.py
ctAssist.pyc		ctAssist.pyc
ctFunc.py		ctFunc.py
ctIO.py		ctIO.py
ctIO.pyc		ctIO.pyc
ctIO.test.py		ctIO.test.py
ctTEST.py		ctTEST.py

About

Scripts for next generation sequencing

Activity

0 stars

1 watching

0 forks

Report repository

Releases

No releases published

Packages

No packages published

Languages

Python 86.7%
Shell 8.9%
Perl 4.3%
R 0.1%

yuzhenpeng/NGS

Folders and files

Latest commit

History