Name		Name	Last commit message	Last commit date
Latest commit History 175 Commits
SPC		SPC
new_data		new_data
.gitignore		.gitignore
10485_20160420-093403.txt		10485_20160420-093403.txt
305_otu_table.biom		305_otu_table.biom
305_otu_table.json		305_otu_table.json
486_otu_table.biom		486_otu_table.biom
486_otu_table.json		486_otu_table.json
487_otu_table.biom		487_otu_table.biom
487_otu_table.json		487_otu_table.json
97_otu_taxonomy.txt		97_otu_taxonomy.txt
97_otus.tree		97_otus.tree
LICENSE		LICENSE
README.md		README.md
SraRunTable.txt		SraRunTable.txt
all.min50.biom		all.min50.biom
all.sub15k.biom		all.sub15k.biom
all.sub15k.min25.biom		all.sub15k.min25.biom
all.sub15k.min50.biom		all.sub15k.min50.biom
all.withtax.biom		all.withtax.biom
converted_milk-sub15k-min10.json		converted_milk-sub15k-min10.json
ctwc.py		ctwc.py
ctwc__cluster_1d.py		ctwc__cluster_1d.py
ctwc__cluster_rank.py		ctwc__cluster_rank.py
ctwc__common.py		ctwc__common.py
ctwc__data_handler.py		ctwc__data_handler.py
ctwc__distance_matrix.py		ctwc__distance_matrix.py
ctwc__metadata_analysis.py		ctwc__metadata_analysis.py
ctwc__plot.py		ctwc__plot.py
ctwc__test.py		ctwc__test.py
milk-sub15k-min10.biom		milk-sub15k-min10.biom
milk-sub15k-min10.json		milk-sub15k-min10.json
milk.zip		milk.zip
milk_3572_otu_table.biom		milk_3572_otu_table.biom
milk_3572_otu_table.json		milk_3572_otu_table.json
milk_3573_otu_table.biom		milk_3573_otu_table.biom
milk_3573_otu_table.json		milk_3573_otu_table.json
milk_3574_otu_table.biom		milk_3574_otu_table.biom
milk_3574_otu_table.json		milk_3574_otu_table.json
milk_3575_otu_table.biom		milk_3575_otu_table.biom
milk_3575_otu_table.json		milk_3575_otu_table.json
milk_3576_otu_table.biom		milk_3576_otu_table.biom
milk_3576_otu_table.json		milk_3576_otu_table.json
milk_3579_otu_table.biom		milk_3579_otu_table.biom
milk_3579_otu_table.json		milk_3579_otu_table.json
milk_all.tre		milk_all.tre
normalized-milk_3572_otu_table.biom		normalized-milk_3572_otu_table.biom
normalized-milk_3572_otu_table.json		normalized-milk_3572_otu_table.json
normalized-milk_3573_otu_table.biom		normalized-milk_3573_otu_table.biom
normalized-milk_3573_otu_table.json		normalized-milk_3573_otu_table.json
normalized-milk_3574_otu_table.biom		normalized-milk_3574_otu_table.biom
normalized-milk_3574_otu_table.json		normalized-milk_3574_otu_table.json
normalized-milk_3575_otu_table.biom		normalized-milk_3575_otu_table.biom
normalized-milk_3575_otu_table.json		normalized-milk_3575_otu_table.json
normalized-milk_3576_otu_table.biom		normalized-milk_3576_otu_table.biom
normalized-milk_3576_otu_table.json		normalized-milk_3576_otu_table.json
normalized-milk_3579_otu_table.biom		normalized-milk_3579_otu_table.biom
normalized-milk_3579_otu_table.json		normalized-milk_3579_otu_table.json
subset-milk_3572_otu_table.json		subset-milk_3572_otu_table.json
subset-milk_3573_otu_table.json		subset-milk_3573_otu_table.json
subset-milk_3574_otu_table.json		subset-milk_3574_otu_table.json
subset-milk_3575_otu_table.json		subset-milk_3575_otu_table.json
subset-milk_3576_otu_table.json		subset-milk_3576_otu_table.json
subset-milk_3579_otu_table.json		subset-milk_3579_otu_table.json
subset-normalized-milk_3572_otu_table.json		subset-normalized-milk_3572_otu_table.json
subset-normalized-milk_3573_otu_table.json		subset-normalized-milk_3573_otu_table.json
subset-normalized-milk_3574_otu_table.json		subset-normalized-milk_3574_otu_table.json
subset-normalized-milk_3575_otu_table.json		subset-normalized-milk_3575_otu_table.json
subset-normalized-milk_3576_otu_table.json		subset-normalized-milk_3576_otu_table.json
subset-normalized-milk_3579_otu_table.json		subset-normalized-milk_3579_otu_table.json
twins-sub15k-min10.json		twins-sub15k-min10.json
twins.zip		twins.zip
twins_all.sub15k.min10.biom		twins_all.sub15k.min10.biom
twins_all.tre		twins_all.tre

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ctwc_16s

This code is a Python implementation of a two-layered clustering algorithm for unsupervised extraction of hidden structures within 16s ribosomal RNA sample sets.

The code is based on CTWC, see here: http://www.pnas.org/content/97/22/12079.full

License

zbarzik/ctwc_16s

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