Skip to content

zcarver/mGhost

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

13 Commits
 
 
 
 
 
 
 
 

Repository files navigation

mGhost

Description

Currently, IndexFungorum(IF), USDA Systematic Mycology and Microbiology Laboratory Fungus-Host Database(SMML) and the Susan C. Tucker Herbarium at Louisiana State University are integrated. This is a 'work-from-directory' script, as such, it should be executed within the working directory. As it is now, mGhost outputs a preliminary csv file containing information queried and a visual of found host specimens that are described with coordinates in Louisiana, USA.

Possible implications of this project include development of meta-information (ecosystem, climatic and geologic histories) for already georeferenced fungal specimens, pathogenic or not, from additional databases to attain a grasp onto the spread of fungal populations.

Installation

The following Python(3) modules are utilized in script:

  • Basemap

  • Matplotlib

  • Numpy

Two dependencies required for the current version of matplotlib/Basemap are:

For the complete installation protocol of matplotlib follow: http://matplotlib.org/users/installing.html and of Basemap: http://matplotlib.org/basemap/users/installing.html or if using Ubuntu follow: https://peak5390.wordpress.com/2012/12/08/matplotlib-basemap-tutorial-installing-matplotlib-and-basemap/

Usage

Simply the user inputs binomial name of phyto-specific fungal pathogen within double quotes where --lim is the max herbarium specimens...

:~/Desktop/progproject$ python mycosGeoHost.py --spp "Cercospora flagellaris" --lim 200

References

License

Please refer to license documentation for matplotlib and databases integrated.

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages