This is the data processing used for the calcium and voltage imaging
The dependent python packages are listed in requirements.txt, which should be all included in a major anaconda package.
Current parallel processing is based on Dask.
- Preprocessing of raw images -- Pixelwise denoising
- Image registration and motion correction
- Local SNMF for Cell segmentation
If you are looking for / using one of the following repos, these are merged to independent folder in the current one, and they are no longer developed or supported.
- denoiseLocalPCA
- spike-detection-voltron
- cmos-denoise
- single-cell rna seq