def __init__(self, parent=None, id=-1,
pos=wx.DefaultPosition,
title="Histogram"):
VizFrame.__init__(self, parent, id, pos, title)
self.box = wx.BoxSizer(wx.HORIZONTAL)
self.panel = wx.Panel(self,-1)
self.widget = HistogramPanel(self, None)
self.widget.draw()
self.MenuBar = wx.MenuBar()
self.FileMenu = wx.Menu()
self.MenuBar.Append(self.FileMenu, "File")
self.SetMenuBar(self.MenuBar)
export = self.FileMenu.Append(-1, "Export graphics")
self.Bind(wx.EVT_MENU, self.OnExport, export)
self.AddMenu = wx.Menu()
self.MenuBar.Append(self.AddMenu, "Add histograms")
self.AddHist = self.AddMenu.Append(-1, "Add New Histogram")
self.Bind(wx.EVT_MENU, self.OnAddHist, self.AddHist)
self.AddMenu.AppendSeparator()
self.ExtraHists = []
self.RadioButtons(['none'])
self.box.Add(self.panel,0,wx.EXPAND)
self.box.Add(self.widget,1,wx.EXPAND)
self.SetSizer(self.box)
self.Show()
def __init__(self, parent=None, id=-1,
pos=wx.DefaultPosition,
title="3D Density"):
VizFrame.__init__(self, parent, id, pos, title)
self.widget = wxVTKRenderWindowInteractor(self,-1)
style = vtk.vtkInteractorStyleTrackballCamera()
self.widget.SetInteractorStyle(style)
self.ren = vtk.vtkRenderer()
self.ren.SetBackground(0.1, 0.1, 0.7)
self.widget.GetRenderWindow().AddRenderer(self.ren)
self.data = None
self.colors = None
# layout the frame
self.box = wx.BoxSizer(wx.HORIZONTAL)
self.leftPanel = wx.BoxSizer(wx.VERTICAL)
self.SetSizer(self.box)
self.box.Add(self.leftPanel,0, wx.EXPAND)
self.box.Add(self.widget,1,wx.EXPAND)
self.Layout()
self.MenuBar = wx.MenuBar()
self.FileMenu = wx.Menu()
self.GateMenu = wx.Menu()
self.MenuBar.Append(self.FileMenu, "File")
self.MenuBar.Append(self.GateMenu, "Gating")
self.SetMenuBar(self.MenuBar)
export = self.FileMenu.Append(-1, "Export graphics")
self.Bind(wx.EVT_MENU, self.OnExport, export)
self.colorGate = self.GateMenu.Append(-1, "Gate on visible colors only")
self.Bind(wx.EVT_MENU, self.GateByColor, self.colorGate)
self.colorGate.Enable(False)
gate = self.GateMenu.Append(-1, "Capture gated events")
self.boxAddMenuItem = self.GateMenu.Append(-1, "Add box gate")
self.GateMenu.AppendSeparator()
self.boxes = []
self.Bind(wx.EVT_MENU, self.OnBox, self.boxAddMenuItem)
self.Bind(wx.EVT_MENU, self.Gate, gate)
self.selectActor = vtk.vtkLODActor()
self.planes = {} #vtk.vtkPlanes()
self.clipper = vtk.vtkClipPolyData()
self.boxCount = 1
self.boxIds = {}
self.Show()
self.SendSizeEvent()
def __init__(self, parent=None, id=-1, pos=wx.DefaultPosition, title="Box and Whiskers"):
VizFrame.__init__(self, parent, id, pos, title)
self.box = wx.BoxSizer(wx.HORIZONTAL)
self.panel = wx.Panel(self, -1)
self.widget = BoxWhiskersPanel(self)
self.widget.draw()
self.MenuBar = wx.MenuBar()
self.FileMenu = wx.Menu()
self.MenuBar.Append(self.FileMenu, "File")
self.SetMenuBar(self.MenuBar)
export = self.FileMenu.Append(-1, "Export graphics")
self.Bind(wx.EVT_MENU, self.OnExport, export)
self.box.Add(self.panel, 0, wx.EXPAND)
self.box.Add(self.widget, 1, wx.EXPAND)
self.SetSizer(self.box)
self.Show()
def __init__(self, parent=None, id=-1,
pos=wx.DefaultPosition,
title="Flow Control Window"):
"""creates main frame for user interface"""
VizFrame.__init__(self, parent, id, pos, title)
self.sp = wx.SplitterWindow(self, -1)
self.p1 = wx.Panel(self.sp, -1)
self.p2 = wx.Panel(self.sp, -1)
self.tree = wx.TreeCtrl(self.p1, -1, wx.DefaultPosition, wx.DefaultSize,
wx.TR_HAS_BUTTONS|wx.TR_EDIT_LABELS)
self.tree.SetDimensions(0, 0, 100, 100)
self.Bind(wx.EVT_TREE_END_LABEL_EDIT, self.OnTreeEdit, self.tree)
self.root = self.tree.AddRoot('root')
self.log = wx.TextCtrl(self.p2, -1, "",
style=wx.TE_RICH|wx.TE_MULTILINE|wx.TE_READONLY, size=(200,100))
# current server URL
self.server = 'http://localhost/'
menubar = wx.MenuBar()
transforms = {}
transforms['clip'] = (self.OnClip, "Clip transform")
transforms['scale'] = (self.OnScale, "Scale transform")
transforms['normal_scale'] = (self.OnNormalScale, "Normal scale transform")
transforms['linear'] = (self.OnLinear, "Linear transform")
transforms['quadratic'] = (self.OnQuadratic, "Quadtratic transform")
transforms['log'] = (self.OnLog, "Log10 transform")
transforms['logn'] = (self.OnLogn, "LogN transform")
transforms['biexponential'] = (self.OnBiexponential, "Biexponential transform")
transforms['logicle'] = (self.OnLogicle, "Logicle transform")
transforms['heyperlog'] = (self.OnHyperlog, "Hyperlog transform")
transforms['arcsinh'] = (self.OnArcsinh, "Arcsinh transform")
# transform menu
self.transformMenu = wx.Menu()
for i in transforms.keys():
menuitem = self.transformMenu.Append(-1, transforms[i][1])
self.Bind(wx.EVT_MENU, transforms[i][0], menuitem)
# filter menu
self.filterMenu = wx.Menu()
self.channels = self.filterMenu.Append(-1, "Sub-Sample by channel")
self.filterMenu.AppendSeparator()
self.events_index = self.filterMenu.Append(-1, "Sub-Sample events: index")
self.events_random = self.filterMenu.Append(-1, "Sub-Sample events: random choice without replacement")
self.events_replace = self.filterMenu.Append(-1, "Sub-Sample events: random choice with replacement")
# bind filter menuitems
self.Bind(wx.EVT_MENU, self.OnChannels, self.channels)
self.Bind(wx.EVT_MENU, self.OnEventsIndex, self.events_index)
self.Bind(wx.EVT_MENU, self.OnEventsRandom, self.events_random)
self.Bind(wx.EVT_MENU, self.OnEventsReplace, self.events_replace)
# ontology menu
self.ontologyMenu = wx.Menu()
loadOntology = self.ontologyMenu.Append(-1, "Load OBO file")
self.Bind(wx.EVT_MENU, self.OnLoadOntology, loadOntology)
# remote process menu
self.remoteProcessMenu = wx.Menu()
submit_job = self.remoteProcessMenu.Append(-1, "Submit job to remote process")
submit_batch = self.remoteProcessMenu.Append(-1, "Submit batch jobs to remote process")
self.Bind(wx.EVT_MENU, self.OnSubmitJob, submit_job)
self.Bind(wx.EVT_MENU, self.OnSubmitBatch, submit_batch)
self.SetMenuBar(menubar)
#statusbar = self.CreateStatusBar()
# createEdit needs to be called before CreatePopup
# to ensure menu's wx.IDs are consistent
self.edit = self.CreateEdit()
self.popup = self.CreatePopup()
self.zPopMenuItem = None
self.Bind(wx.EVT_CONTEXT_MENU, self.OnShowPopup)
self.Bind(wx.EVT_TREE_ITEM_RIGHT_CLICK, self.OnShowPopup, self.tree)
self.Bind(wx.EVT_TREE_ITEM_ACTIVATED, self.OnDisplayItem, self.tree)
# default dir for OBO files
self.defaultOBOdir = "."
self.exportDir = self.io.defaultDir.replace('results','data')
def __init__(self, parent=None, id=-1, pos=wx.DefaultPosition, title="2D Density", show=True):
VizFrame.__init__(self, parent, id, pos, title)
# self.widget = TwoDPanel(None, 1, 1,self)
self.widget = TwoDPanel(self, None, None)
# layout the frame
self.box = wx.BoxSizer(wx.HORIZONTAL)
self.leftPanel = wx.BoxSizer(wx.VERTICAL)
self.SetSizer(self.box)
self.box.Add(self.leftPanel, 0, wx.EXPAND)
self.box.Add(self.widget, 1, wx.EXPAND)
self.Layout()
# self.widget.draw()
self.MenuBar = wx.MenuBar()
self.FileMenu = wx.Menu()
self.EditMenu = wx.Menu()
self.VisualMenu = wx.Menu()
self.GateMenu = wx.Menu()
self.MenuBar.Append(self.FileMenu, "File")
self.MenuBar.Append(self.EditMenu, "Edit")
self.MenuBar.Append(self.VisualMenu, "Visuals")
self.MenuBar.Append(self.GateMenu, "Gating")
self.SetMenuBar(self.MenuBar)
self.widget.scatter = self.VisualMenu.AppendCheckItem(-1, "Scatter Plot")
self.widget.scatter.Check(True)
self.widget.contour = self.VisualMenu.AppendCheckItem(-1, "Contour Plot")
self.widget.ellipse = self.VisualMenu.AppendCheckItem(-1, "Confidence Ellipse")
edit_fig = self.EditMenu.Append(-1, "Change figure attributes")
edit_labels = self.EditMenu.Append(-1, "Change cell subset labels")
self.Bind(wx.EVT_MENU, self.OnChangeFigAttr, edit_fig)
self.Bind(wx.EVT_MENU, self.OnZLabel, edit_labels)
self.colorGate = self.GateMenu.Append(-1, "Gate on visible colors only")
polyGate = self.GateMenu.Append(-1, "Add 4-polygon gate")
quadGate = self.GateMenu.Append(-1, "Add quadrant gate")
removePolyGate = self.GateMenu.Append(-1, "Remove 4-polygon gate")
removeQuadGate = self.GateMenu.Append(-1, "Remove quadrant gate")
gate = self.GateMenu.Append(-1, "Capture gated events")
self.ellipses = self.GateMenu.Append(-1, "Specify ellipse confidence")
self.GateMenu.AppendSeparator()
copyGate = self.GateMenu.Append(-1, "Copy 4-polygon gate")
pasteGate = self.GateMenu.Append(-1, "Paste 4-polygon gate")
self.Bind(wx.EVT_MENU, self.GateByColor, self.colorGate)
self.colorGate.Enable(False)
self.Bind(wx.EVT_MENU, self.OnEllipses, self.ellipses)
self.Bind(wx.EVT_MENU, self.OnAddPolyGate, polyGate)
self.Bind(wx.EVT_MENU, self.OnAddQuadGate, quadGate)
self.Bind(wx.EVT_MENU, self.OnRemovePolyGate, removePolyGate)
self.Bind(wx.EVT_MENU, self.OnRemoveQuadGate, removeQuadGate)
self.Bind(wx.EVT_MENU, self.Gate, gate)
self.Bind(wx.EVT_MENU, self.OnCopyGate, copyGate)
self.Bind(wx.EVT_MENU, self.OnPasteGate, pasteGate)
# try to save figures
export = self.FileMenu.Append(-1, "Export graphics")
self.Bind(wx.EVT_MENU, self.OnExport, export)
self.Bind(wx.EVT_MENU, self.OnMenuSwitch, self.widget.scatter)
self.Bind(wx.EVT_MENU, self.OnMenuSwitch, self.widget.contour)
self.Bind(wx.EVT_MENU, self.OnMenuSwitch, self.widget.ellipse)
if show:
self.Show()
self.SendSizeEvent()
self.model = None