def testExecute(self):
self.run()
# Compare results
strXMLExpected = self.readAndParseFile(self.__strReferenceDataOutputFile)
xsDataObtained = self.getPlugin().getDataOutput()
xsDataExpected = XSDataMOSFLMOutputIntegration.parseString(strXMLExpected)
# Remove the bestFileHKL part which creates problem...
xsDataObtained.setBestfileHKL(None)
xsDataExpected.setBestfileHKL(None)
EDAssert.strAlmostEqual(xsDataExpected.marshal(), xsDataObtained.marshal(), "(MOSFLM integration result comparison - expected versus obtained)", 0.1, 5000)
def testGenerateExecutiveSummary(self):
pluginIntegration = self.createPlugin()
pluginIntegration.setScriptExecutable("cat")
pluginIntegration.configure()
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
strMOSFLMInputIntegrationXML = self.readAndParseFile(self.strReferenceDataInputFile)
strMOSFLMOutputIntegrationXML = self.readAndParseFile(self.strReferenceDataOutputFile)
xsDataMOSFLMInputIntegration = XSDataMOSFLMInputIntegration.parseString(strMOSFLMInputIntegrationXML)
xsDataMOSFLMOutputIntegration = XSDataMOSFLMOutputIntegration.parseString(strMOSFLMOutputIntegrationXML)
pluginIntegration.setDataInput(xsDataMOSFLMInputIntegration)
pluginIntegration.setDataOutput(xsDataMOSFLMOutputIntegration)
pluginIntegration.generateExecutiveSummary(pluginIntegration)
pluginIntegration.verboseScreenExecutiveSummary()
self.cleanUp(pluginIntegration)
def testGenerateXSDataIntegrationSubWedgeResult(self):
strFilename = "XSDataMOSFLMOutputIntegration_reference.xml"
strPath = os.path.join(self.m_strDataPath, strFilename)
strXMLMOSFLMOutputIntegration = EDUtilsTest.readAndParseFile(strPath)
from XSDataMOSFLMv10 import XSDataMOSFLMOutputIntegration
xsDataMOSFLMOutputIntegration = XSDataMOSFLMOutputIntegration.parseString(strXMLMOSFLMOutputIntegration)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataIntegrationSubWedgeResult = EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationSubWedgeResult(xsDataMOSFLMOutputIntegration)
strReferenceFilename = "XSDataIntegrationSubWedgeResult_reference.xml"
strReferencePath = os.path.join(self.m_strDataPath, strReferenceFilename)
strXMLIntegrationSubWedgeReference = EDUtilsTest.readAndParseFile(strReferencePath)
from XSDataMXv1 import XSDataIntegrationSubWedgeResult
xsDataIntegrationSubWedgeResult = XSDataIntegrationSubWedgeResult.parseString(strXMLIntegrationSubWedgeReference)
EDAssert.equal(xsDataIntegrationSubWedgeResult.marshal(), xsDataIntegrationSubWedgeResult.marshal())
def testExecute(self):
self.run()
# Compare results
strXMLExpected = self.readAndParseFile(
self.__strReferenceDataOutputFile)
xsDataObtained = self.getPlugin().getDataOutput()
xsDataExpected = XSDataMOSFLMOutputIntegration.parseString(
strXMLExpected)
# Remove the bestFileHKL part which creates problem...
xsDataObtained.setBestfileHKL(None)
xsDataExpected.setBestfileHKL(None)
EDAssert.strAlmostEqual(
xsDataExpected.marshal(), xsDataObtained.marshal(),
"(MOSFLM integration result comparison - expected versus obtained)",
0.1, 5000)
def testCreateDataMOSFLMOutputIntegration(self):
pluginIntegration = self.createPlugin()
pluginIntegration.setScriptExecutable("cat")
pluginIntegration.configure()
strBaseName = pluginIntegration.getBaseName()
shutil.copyfile(
os.path.join(self.strUnitTestDataHome,
"EDPluginMOSFLMIntegrationv10_bestfileDat_ok.txt"),
os.path.join(pluginIntegration.getWorkingDirectory(),
"bestfile.dat"))
shutil.copyfile(
os.path.join(self.strUnitTestDataHome,
"EDPluginMOSFLMIntegrationv10_bestfilePar_ok.txt"),
os.path.join(pluginIntegration.getWorkingDirectory(),
"bestfile.par"))
shutil.copyfile(
os.path.join(self.strUnitTestDataHome,
"EDPluginMOSFLMIntegrationv10_bestfileHKL_ok.txt"),
os.path.join(pluginIntegration.getWorkingDirectory(),
"bestfile.hkl"))
shutil.copyfile(
os.path.join(
self.strUnitTestDataHome,
"EDPluginMOSFLMIntegrationv10_outputDnaTables_ok.xml"),
os.path.join(pluginIntegration.getWorkingDirectory(),
strBaseName + "_dnaTables.xml"))
strMatrixFile = os.path.join(self.strUnitTestDataHome,
"EDPluginMOSFLMv10_autoindexMat_ok.txt")
pluginIntegration.setMatrixFileName(strMatrixFile)
xsDataMOSFLMIntegrationOutput = pluginIntegration.createDataMOSFLMOutputIntegration(
)
# Fix problem with absolute path by replacing it with a fixed one
xsDataFile = XSDataFile()
xsDataFile.setPath(
XSDataString("/tmp/EDPluginMOSFLMIntegrationv10_process_1_1.mtz"))
xsDataMOSFLMIntegrationOutput.setGeneratedMTZFile(xsDataFile)
strReferenceXML = self.readAndParseFile(
self.strReferenceDataOutputFile)
xsDataMOSFLMIntegrationOutputReference = XSDataMOSFLMOutputIntegration.parseString(
strReferenceXML)
# Replace path to log file since it cannot be determined by the unit test
xsDataMOSFLMIntegrationOutput.setPathToLogFile(
XSDataFile(XSDataString("MOSFLMIntegrationv10.log")))
EDAssert.equal(xsDataMOSFLMIntegrationOutputReference.marshal(),
xsDataMOSFLMIntegrationOutput.marshal())
def testGenerateExecutiveSummary(self):
pluginIntegration = self.createPlugin()
pluginIntegration.setScriptExecutable("cat")
pluginIntegration.configure()
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
strMOSFLMInputIntegrationXML = self.readAndParseFile(
self.strReferenceDataInputFile)
strMOSFLMOutputIntegrationXML = self.readAndParseFile(
self.strReferenceDataOutputFile)
xsDataMOSFLMInputIntegration = XSDataMOSFLMInputIntegration.parseString(
strMOSFLMInputIntegrationXML)
xsDataMOSFLMOutputIntegration = XSDataMOSFLMOutputIntegration.parseString(
strMOSFLMOutputIntegrationXML)
pluginIntegration.setDataInput(xsDataMOSFLMInputIntegration)
pluginIntegration.setDataOutput(xsDataMOSFLMOutputIntegration)
pluginIntegration.generateExecutiveSummary(pluginIntegration)
pluginIntegration.verboseScreenExecutiveSummary()
self.cleanUp(pluginIntegration)
def testCreateDataMOSFLMOutputIntegration(self):
pluginIntegration = self.createPlugin()
pluginIntegration.setScriptExecutable("cat")
pluginIntegration.configure()
strBaseName = pluginIntegration.getBaseName()
shutil.copyfile(os.path.join(self.strUnitTestDataHome, "EDPluginMOSFLMIntegrationv10_bestfileDat_ok.txt"), os.path.join (pluginIntegration.getWorkingDirectory(), "bestfile.dat"))
shutil.copyfile(os.path.join(self.strUnitTestDataHome, "EDPluginMOSFLMIntegrationv10_bestfilePar_ok.txt"), os.path.join (pluginIntegration.getWorkingDirectory(), "bestfile.par"))
shutil.copyfile(os.path.join(self.strUnitTestDataHome, "EDPluginMOSFLMIntegrationv10_bestfileHKL_ok.txt"), os.path.join (pluginIntegration.getWorkingDirectory(), "bestfile.hkl"))
shutil.copyfile(os.path.join(self.strUnitTestDataHome, "EDPluginMOSFLMIntegrationv10_outputDnaTables_ok.xml"), os.path.join(pluginIntegration.getWorkingDirectory(), strBaseName + "_dnaTables.xml"))
strMatrixFile = os.path.join(self.strUnitTestDataHome, "EDPluginMOSFLMv10_autoindexMat_ok.txt")
pluginIntegration.setMatrixFileName(strMatrixFile)
xsDataMOSFLMIntegrationOutput = pluginIntegration.createDataMOSFLMOutputIntegration()
# Fix problem with absolute path by replacing it with a fixed one
xsDataFile = XSDataFile()
xsDataFile.setPath(XSDataString("/tmp/EDPluginMOSFLMIntegrationv10_process_1_1.mtz"))
xsDataMOSFLMIntegrationOutput.setGeneratedMTZFile(xsDataFile)
strReferenceXML = self.readAndParseFile(self.strReferenceDataOutputFile)
xsDataMOSFLMIntegrationOutputReference = XSDataMOSFLMOutputIntegration.parseString(strReferenceXML)
EDAssert.equal(xsDataMOSFLMIntegrationOutputReference.marshal(), xsDataMOSFLMIntegrationOutput.marshal())
def testGenerateXSDataIntegrationSubWedgeResult(self):
strFilename = "XSDataMOSFLMOutputIntegration_reference.xml"
strPath = os.path.join(self.m_strDataPath, strFilename)
strXMLMOSFLMOutputIntegration = EDUtilsTest.readAndParseFile(strPath)
from XSDataMOSFLMv10 import XSDataMOSFLMOutputIntegration
xsDataMOSFLMOutputIntegration = XSDataMOSFLMOutputIntegration.parseString(
strXMLMOSFLMOutputIntegration)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataIntegrationSubWedgeResult = EDHandlerXSDataMOSFLMv10.generateXSDataIntegrationSubWedgeResult(
xsDataMOSFLMOutputIntegration)
strReferenceFilename = "XSDataIntegrationSubWedgeResult_reference.xml"
strReferencePath = os.path.join(self.m_strDataPath,
strReferenceFilename)
strXMLIntegrationSubWedgeReference = EDUtilsTest.readAndParseFile(
strReferencePath)
from XSDataMXv1 import XSDataIntegrationSubWedgeResult
xsDataIntegrationSubWedgeResult = XSDataIntegrationSubWedgeResult.parseString(
strXMLIntegrationSubWedgeReference)
EDAssert.equal(xsDataIntegrationSubWedgeResult.marshal(),
xsDataIntegrationSubWedgeResult.marshal())
def createDataMOSFLMOutputIntegration(self):
self.DEBUG("EDPluginMOSFLMIntegrationv10.createDataMOSFLMOutputIntegration")
xsDataMOSFLMOutputIntegration = XSDataMOSFLMOutputIntegration()
# Read bestfile.par, bestfile.hkl and bestfile.dat
strBestfilePar = self.readBestFile("bestfile.par")
bContinue = True
if (strBestfilePar is not None):
xsDataMOSFLMOutputIntegration.setBestfilePar(XSDataString(strBestfilePar))
else:
bContinue = False
if bContinue:
strBestfileHKL = self.readBestFile("bestfile.hkl")
if (strBestfileHKL is not None):
xsDataMOSFLMOutputIntegration.setBestfileHKL(XSDataString(strBestfileHKL))
else:
bContinue = False
if bContinue:
strBestfileDat = self.readBestFile("bestfile.dat")
if (strBestfileDat is not None):
xsDataMOSFLMOutputIntegration.setBestfileDat(XSDataString(strBestfileDat))
else:
bContinue = False
if bContinue:
strDnaTablesXML = self.readProcessFile(self.getBaseName() + "_dnaTables.xml")
xsDataDnaTables = dna_tables.parseString(strDnaTablesXML)
xsTableIntegrationResults = EDUtilsTable.getTableFromTables(xsDataDnaTables, "integration_results")
xsListFinalResiduals = EDUtilsTable.getListsFromTable(xsTableIntegrationResults, "final_residuals")[0]
strRMSSpotDeviation = EDUtilsTable.getItemFromList(xsListFinalResiduals, "rms").getValueOf_()
xsDataMOSFLMOutputIntegration.setRMSSpotDeviation(XSDataLength(float(strRMSSpotDeviation)))
strBeamPositionX = EDUtilsTable.getItemFromList(xsListFinalResiduals, "xcen").getValueOf_()
strBeamPositionY = EDUtilsTable.getItemFromList(xsListFinalResiduals, "ycen").getValueOf_()
xsDataMOSFLMBeamPosition = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeamPosition.setX(XSDataLength(float(strBeamPositionX)))
xsDataMOSFLMBeamPosition.setY(XSDataLength(float(strBeamPositionY)))
xsDataMOSFLMOutputIntegration.setRefinedBeam(xsDataMOSFLMBeamPosition)
xsDataMOSFLMNewmatMatrix = self.getDataMOSFLMMatrix()
xsDataMOSFLMOutputIntegration.setRefinedNewmat(xsDataMOSFLMNewmatMatrix)
# New results (described in bug #63)
xsTableIntegrationOutput = EDUtilsTable.getTableFromTables(xsDataDnaTables, "integration_output")
xsListOutputFiles = EDUtilsTable.getListsFromTable(xsTableIntegrationOutput, "output_files")[0]
strMTZFilename = EDUtilsTable.getItemFromList(xsListOutputFiles, "hklout").getValueOf_()
strMTZPath = os.path.join(self.getWorkingDirectory(), strMTZFilename)
xsDataFile = XSDataFile()
xsDataFile.setPath(XSDataString(strMTZPath))
xsDataMOSFLMOutputIntegration.setGeneratedMTZFile(xsDataFile)
xsTableSummaryInformation = EDUtilsTable.getTableFromTables(xsDataDnaTables, "summary_information")
xsListSummary = EDUtilsTable.getListsFromTable(xsTableSummaryInformation, "summary")[0]
xsListSpots = EDUtilsTable.getListsFromTable(xsTableSummaryInformation, "spots")[0]
strDistance = EDUtilsTable.getItemFromList(xsListSummary, "distance").getValueOf_()
xsDataMOSFLMOutputIntegration.setRefinedDistance(XSDataLength(float(strDistance)))
strYScale = EDUtilsTable.getItemFromList(xsListSummary, "yscale").getValueOf_()
xsDataMOSFLMOutputIntegration.setRefinedYScale(XSDataFloat(float(strYScale)))
strOverallIOverSigma = EDUtilsTable.getItemFromList(xsListSummary, "isigall").getValueOf_()
xsDataMOSFLMOutputIntegration.setOverallIOverSigma(XSDataFloat(float(strOverallIOverSigma)))
strHighestResolutionIOverSigma = EDUtilsTable.getItemFromList(xsListSummary, "isigout").getValueOf_()
xsDataMOSFLMOutputIntegration.setHighestResolutionIOverSigma(XSDataFloat(float(strHighestResolutionIOverSigma)))
strNumberOfBadReflections = EDUtilsTable.getItemFromList(xsListSpots, "bad_spots").getValueOf_()
xsDataMOSFLMOutputIntegration.setNumberOfBadReflections(XSDataInteger(int(strNumberOfBadReflections)))
strNumberOfFullyRecordedReflections = EDUtilsTable.getItemFromList(xsListSpots, "full").getValueOf_()
xsDataMOSFLMOutputIntegration.setNumberOfFullyRecordedReflections(XSDataInteger(int(strNumberOfFullyRecordedReflections)))
strNumberOfNegativeReflections = EDUtilsTable.getItemFromList(xsListSpots, "negative").getValueOf_()
xsDataMOSFLMOutputIntegration.setNumberOfNegativeReflections(XSDataInteger(int(strNumberOfNegativeReflections)))
strNumberOfOverlappedReflections = EDUtilsTable.getItemFromList(xsListSpots, "overlap").getValueOf_()
xsDataMOSFLMOutputIntegration.setNumberOfOverlappedReflections(XSDataInteger(int(strNumberOfOverlappedReflections)))
strNumberOfPartialReflections = EDUtilsTable.getItemFromList(xsListSpots, "partial").getValueOf_()
xsDataMOSFLMOutputIntegration.setNumberOfPartialReflections(XSDataInteger(int(strNumberOfPartialReflections)))
# Fill in the statistics
xsDataMOSFLMOutputIntegration.setOverallStatistics(self.getMOSFLMIntegrationStatisticsPerResolutionBin(xsDataDnaTables, "bin_0"))
iIndex = 1
bContinue = True
fMinResolution = None
while (bContinue == True):
strBin = "bin_%d" % iIndex
# I don't know how many intensity bins there are. Since the EDUtilsTable.getListsFromTable
# method crashes if the list is not present, I had to wrap the calls to this method in
# try - except:
try:
xsDataMOSFLMIntegrationStatisticsPerResolutionBin = self.getMOSFLMIntegrationStatisticsPerResolutionBin(xsDataDnaTables, strBin, fMinResolution)
fMinResolution = xsDataMOSFLMIntegrationStatisticsPerResolutionBin.getMaxResolution().getValue()
xsDataMOSFLMOutputIntegration.addStatisticsPerResolutionBin(xsDataMOSFLMIntegrationStatisticsPerResolutionBin)
iIndex += 1
except:
bContinue = False
# Path to log file
xsDataMOSFLMOutputIntegration.setPathToLogFile(XSDataFile(XSDataString(os.path.join(self.getWorkingDirectory(), self.getScriptLogFileName()))))
return xsDataMOSFLMOutputIntegration
def __init__(self):
EDPluginMOSFLMv10.__init__(self)
self.setXSDataInputClass(XSDataMOSFLMInputIntegration)
self.setDataOutput(XSDataMOSFLMOutputIntegration())
def createDataMOSFLMOutputIntegration(self):
self.DEBUG("EDPluginMOSFLMIntegrationv10.createDataMOSFLMOutputIntegration")
xsDataMOSFLMOutputIntegration = XSDataMOSFLMOutputIntegration()
# Read bestfile.par, bestfile.hkl and bestfile.dat
strBestfilePar = self.readBestFile("bestfile.par")
bContinue = True
if (strBestfilePar is not None):
xsDataMOSFLMOutputIntegration.setBestfilePar(XSDataString(strBestfilePar))
else:
bContinue = False
if bContinue:
strBestfileHKL = self.readBestFile("bestfile.hkl")
if (strBestfileHKL is not None):
xsDataMOSFLMOutputIntegration.setBestfileHKL(XSDataString(strBestfileHKL))
else:
bContinue = False
if bContinue:
strBestfileDat = self.readBestFile("bestfile.dat")
if (strBestfileDat is not None):
xsDataMOSFLMOutputIntegration.setBestfileDat(XSDataString(strBestfileDat))
else:
bContinue = False
if bContinue:
strDnaTablesXML = self.readProcessFile(self.getBaseName() + "_dnaTables.xml")
xsDataDnaTables = dna_tables.parseString(strDnaTablesXML)
xsTableIntegrationResults = EDUtilsTable.getTableFromTables(xsDataDnaTables, "integration_results")
xsListFinalResiduals = EDUtilsTable.getListsFromTable(xsTableIntegrationResults, "final_residuals")[0]
strRMSSpotDeviation = EDUtilsTable.getItemFromList(xsListFinalResiduals, "rms").getValueOf_()
xsDataMOSFLMOutputIntegration.setRMSSpotDeviation(XSDataLength(float(strRMSSpotDeviation)))
strBeamPositionX = EDUtilsTable.getItemFromList(xsListFinalResiduals, "xcen").getValueOf_()
strBeamPositionY = EDUtilsTable.getItemFromList(xsListFinalResiduals, "ycen").getValueOf_()
xsDataMOSFLMBeamPosition = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeamPosition.setX(XSDataLength(float(strBeamPositionX)))
xsDataMOSFLMBeamPosition.setY(XSDataLength(float(strBeamPositionY)))
xsDataMOSFLMOutputIntegration.setRefinedBeam(xsDataMOSFLMBeamPosition)
xsDataMOSFLMNewmatMatrix = self.getDataMOSFLMMatrix()
xsDataMOSFLMOutputIntegration.setRefinedNewmat(xsDataMOSFLMNewmatMatrix)
# New results (described in bug #63)
xsTableIntegrationOutput = EDUtilsTable.getTableFromTables(xsDataDnaTables, "integration_output")
xsListOutputFiles = EDUtilsTable.getListsFromTable(xsTableIntegrationOutput, "output_files")[0]
strMTZFilename = EDUtilsTable.getItemFromList(xsListOutputFiles, "hklout").getValueOf_()
strMTZPath = os.path.join(self.getWorkingDirectory(), strMTZFilename)
xsDataFile = XSDataFile()
xsDataFile.setPath(XSDataString(strMTZPath))
xsDataMOSFLMOutputIntegration.setGeneratedMTZFile(xsDataFile)
xsTableSummaryInformation = EDUtilsTable.getTableFromTables(xsDataDnaTables, "summary_information")
xsListSummary = EDUtilsTable.getListsFromTable(xsTableSummaryInformation, "summary")[0]
xsListSpots = EDUtilsTable.getListsFromTable(xsTableSummaryInformation, "spots")[0]
strDistance = EDUtilsTable.getItemFromList(xsListSummary, "distance").getValueOf_()
xsDataMOSFLMOutputIntegration.setRefinedDistance(XSDataLength(float(strDistance)))
strYScale = EDUtilsTable.getItemFromList(xsListSummary, "yscale").getValueOf_()
xsDataMOSFLMOutputIntegration.setRefinedYScale(XSDataFloat(float(strYScale)))
strOverallIOverSigma = EDUtilsTable.getItemFromList(xsListSummary, "isigall").getValueOf_()
xsDataMOSFLMOutputIntegration.setOverallIOverSigma(XSDataFloat(float(strOverallIOverSigma)))
strHighestResolutionIOverSigma = EDUtilsTable.getItemFromList(xsListSummary, "isigout").getValueOf_()
xsDataMOSFLMOutputIntegration.setHighestResolutionIOverSigma(XSDataFloat(float(strHighestResolutionIOverSigma)))
strNumberOfBadReflections = EDUtilsTable.getItemFromList(xsListSpots, "bad_spots").getValueOf_()
xsDataMOSFLMOutputIntegration.setNumberOfBadReflections(XSDataInteger(int(strNumberOfBadReflections)))
strNumberOfFullyRecordedReflections = EDUtilsTable.getItemFromList(xsListSpots, "full").getValueOf_()
xsDataMOSFLMOutputIntegration.setNumberOfFullyRecordedReflections(XSDataInteger(int(strNumberOfFullyRecordedReflections)))
strNumberOfNegativeReflections = EDUtilsTable.getItemFromList(xsListSpots, "negative").getValueOf_()
xsDataMOSFLMOutputIntegration.setNumberOfNegativeReflections(XSDataInteger(int(strNumberOfNegativeReflections)))
strNumberOfOverlappedReflections = EDUtilsTable.getItemFromList(xsListSpots, "overlap").getValueOf_()
xsDataMOSFLMOutputIntegration.setNumberOfOverlappedReflections(XSDataInteger(int(strNumberOfOverlappedReflections)))
strNumberOfPartialReflections = EDUtilsTable.getItemFromList(xsListSpots, "partial").getValueOf_()
xsDataMOSFLMOutputIntegration.setNumberOfPartialReflections(XSDataInteger(int(strNumberOfPartialReflections)))
# Fill in the statistics
xsDataMOSFLMOutputIntegration.setOverallStatistics(self.getMOSFLMIntegrationStatisticsPerResolutionBin(xsDataDnaTables, "bin_0"))
iIndex = 1
bContinue = True
fMinResolution = None
while (bContinue == True):
strBin = "bin_%d" % iIndex
# I don't know how many intensity bins there are. Since the EDUtilsTable.getListsFromTable
# method crashes if the list is not present, I had to wrap the calls to this method in
# try - except:
try:
xsDataMOSFLMIntegrationStatisticsPerResolutionBin = self.getMOSFLMIntegrationStatisticsPerResolutionBin(xsDataDnaTables, strBin, fMinResolution)
fMinResolution = xsDataMOSFLMIntegrationStatisticsPerResolutionBin.getMaxResolution().getValue()
xsDataMOSFLMOutputIntegration.addStatisticsPerResolutionBin(xsDataMOSFLMIntegrationStatisticsPerResolutionBin)
iIndex += 1
except:
bContinue = False
# Path to log file
xsDataMOSFLMOutputIntegration.setPathToLogFile(XSDataFile(XSDataString(os.path.join(self.getWorkingDirectory(), self.getScriptLogFileName()))))
return xsDataMOSFLMOutputIntegration