def test_creation_coreoverlap(self):
cluster = create_cluster(3, 8, 71, 76, 'a')
extra_cluster = create_cluster(50, 60, 120, 170, 'b')
# create a CDS within both clusters that has a product from only one cluster
cds = create_cds(60, 65, ["a"])
cluster.add_cds(cds)
extra_cluster.add_cds(cds)
created = creator([cluster, extra_cluster])
print(created)
assert len(created) == 1
supercluster = created[0]
assert supercluster.kind == SuperCluster.kinds.INTERLEAVED
assert supercluster.location == FeatureLocation(3, 170)
def test_creation_neighbours(self):
cluster = create_cluster(3, 8, 71, 76, 'a')
extra_cluster = create_cluster(50, 100, 120, 170, 'b')
created = creator([cluster, extra_cluster])
print(created)
assert len(created) == 3
expected_location = FeatureLocation(cluster.location.start,
extra_cluster.location.end)
assert created[0].kind == SuperCluster.kinds.NEIGHBOURING and created[
0].location == expected_location
assert created[1].kind == SuperCluster.kinds.SINGLE and created[
1].location == cluster.location
assert created[2].kind == SuperCluster.kinds.SINGLE and created[
2].location == extra_cluster.location
def test_creation_hybrid(self):
cluster = create_cluster(3, 8, 71, 76, 'a')
hybrid_cluster = create_cluster(50, 60, 120, 170, 'b')
# insert the cds that will cause the hybrid call
cds_ab = create_cds(60, 65, ["a", "b"])
cluster.add_cds(cds_ab)
hybrid_cluster.add_cds(cds_ab)
created = creator([cluster, hybrid_cluster])
print(created)
assert len(created) == 1
supercluster = created[0]
assert supercluster.kind == SuperCluster.kinds.CHEMICAL_HYBRID
assert supercluster.location == FeatureLocation(3, 170)
def test_creation_mixed(self):
cluster = create_cluster(3, 8, 71, 76, 'a')
hybrid_cluster = create_cluster(50, 60, 120, 170, 'b')
overlap_cluster = create_cluster(80, 90, 130, 180, 'o')
neighbour_cluster = create_cluster(50, 210, 260, 270, 'a')
isolated_cluster = create_cluster(450, 500, 550, 600, 'alone')
# insert the cds that will cause the hybrid call
cds_ab = create_cds(60, 65, ["a", "b"])
cluster.add_cds(cds_ab)
hybrid_cluster.add_cds(cds_ab)
created = creator([
cluster, hybrid_cluster, overlap_cluster, neighbour_cluster,
isolated_cluster
])
print(created)
assert len(created) == 5
assert created[0].location == FeatureLocation(3, 270)
assert created[0].kind == SuperCluster.kinds.NEIGHBOURING
assert created[0].clusters == (cluster, hybrid_cluster,
overlap_cluster, neighbour_cluster)
assert created[1].location == FeatureLocation(3, 180)
assert created[1].kind == SuperCluster.kinds.INTERLEAVED
assert created[1].clusters == (cluster, hybrid_cluster,
overlap_cluster)
assert created[2].location == FeatureLocation(3, 170)
assert created[2].kind == SuperCluster.kinds.CHEMICAL_HYBRID
assert created[2].clusters == (cluster, hybrid_cluster)
assert created[3].location == FeatureLocation(50, 270)
assert created[3].kind == SuperCluster.kinds.SINGLE
assert created[3].clusters == (neighbour_cluster, )
assert created[4].location == FeatureLocation(450, 600)
assert created[4].kind == SuperCluster.kinds.SINGLE
assert created[4].clusters == (isolated_cluster, )
def test_creation_single(self):
created = creator([create_cluster(3, 8, 71, 76, 'a')])
print(created)
assert len(created) == 1
assert created[0].location == FeatureLocation(3, 76)
assert created[0].kind == SuperCluster.kinds.SINGLE
def test_creation_empty(self):
assert creator([]) == []