def variables():
v = ArgumentParser()
v.path = os.path.join(testpath, 'testdata', 'results')
v.targetpath = os.path.join(testpath, 'testdata', 'targets')
v.miseqpath = os.path.join(testpath, 'testdata')
v.miseqfolder = 'flowcell'
v.readlengthforward = '1'
v.readlengthreverse = '0'
v.customsamplesheet = os.path.join(v.miseqpath, v.miseqfolder,
'SampleSheet.csv')
v.copy = True
v.debug = True
return v
def variables():
v = ArgumentParser()
v.sequencepath = os.path.join(testpath, 'testdata')
v.referencefilepath = os.path.join(v.sequencepath, 'databases')
v.customsamplesheet = os.path.join(v.sequencepath, 'SampleSheet.csv')
v.debug = True
v.numreads = 2
v.kmerrange = '21'
v.preprocess = False
v.basicassembly = True
v.threads = multiprocessing.cpu_count()
v.startingtime = time()
v.commit = b''
v.homepath = scriptpath
return v
def variables():
v = ArgumentParser()
v.sequencepath = os.path.join(testpath, 'testdata')
v.referencefilepath = os.path.join(v.sequencepath, 'databases')
v.customsamplesheet = os.path.join(v.sequencepath, 'SampleSheet.csv')
v.debug = True
v.numreads = 2
v.kmerrange = '21'
v.preprocess = False
v.basicassembly = True
v.threads = multiprocessing.cpu_count()
v.startingtime = time()
v.commit = b''
v.homepath = scriptpath
return v
def __init__(self, tag_size):
# The python bindings for the April Tag library require this strange configuration:
parser = ArgumentParser(description='test apriltag Python bindings')
parser.families = 'tag36h11'
parser.border = 1 # how wide (in bit-sizes) is the black border? (usually 1)
parser.nthreads = 4 #(int) number of threads to use
parser.quad_decimate = 1.0 #(float) Decimate input image by this factor
parser.quad_blur = 0.0 #(float) Apply low-pass blur to input; negative sharpens
parser.refine_edges = True #(bool) Set to True to spend more time to align edges of tags
parser.refine_decode = True #(bool) Set to True to spend more time to decode tags
parser.refine_pose = True #(bool) Set to True to spend more time to precisely localize tags
parser.debug = False #(bool)Enable/Disable debugging output (slow when enabled)
parser.quad_contours = True
apriltag.add_arguments(parser)
self.options = parser.parse_args()
self.options.tag_size = tag_size
