def _organize_merge_samples(align_out, dirs, config_file):
"""Back compatibility handling organizing and merging samples.
"""
samples = merge.organize_samples([align_out], dirs, config_file)
assert len(samples) == 1 and len(samples[0]) == 1
sample_data = samples[0][0]
sample_data["dirs"]["work"] = os.path.dirname(align_out["work_bam"])
samples2 = sample.merge_sample(sample_data)
assert len(samples2) == 1 and len(samples2[0]) == 1
data = samples2[0][0]
data["dirs"] = copy.deepcopy(dirs)
return data
def merge_sample(*args):
return sample.merge_sample(*args)
def merge_sample(*args):
return sample.merge_sample(*args)
