def __init__(self, w_spams_func, u_spams_func, **other_params):
super(BatchBivariateLearner, self).__init__()
self.allParams = other_params
self.initDefaults()
self.elementsSeen = 0
self.X = None
self.w = None
self.u = None
self.w_bias = None
self.u_bias = None
self.bias = None
self.change_eval = BiMeanSquareEval(self)
self.part_eval = RootMeanEval()
self.w_func = w_spams_func
self.u_func = u_spams_func
def __init__(self, w_spams_func, u_spams_func, **other_params): super(BatchBivariateLearner, self).__init__() self.allParams = other_params self.initDefaults() self.elementsSeen = 0 self.X = None self.w = None self.u = None self.w_bias = None self.u_bias = None self.bias = None self.change_eval = BiMeanSquareEval(self) self.part_eval = RootMeanEval() self.w_func = w_spams_func self.u_func = u_spams_func
class BatchBivariateLearner(OnlineLearner):
"""
For every X,Y pair, add to an existing set of X,Y and relearn the model
from scratch
All data recieved is collected and recompiled into a new numpy vector
every time. This gives best conceivable result for a linear system
given this optimisation scheme
"""
def __init__(self, w_spams_func, u_spams_func, **other_params):
super(BatchBivariateLearner, self).__init__()
self.allParams = other_params
self.initDefaults()
self.elementsSeen = 0
self.X = None
self.w = None
self.u = None
self.w_bias = None
self.u_bias = None
self.bias = None
self.change_eval = BiMeanSquareEval(self)
self.part_eval = RootMeanEval()
self.w_func = w_spams_func
self.u_func = u_spams_func
def initDefaults(self):
self.allParams["bivar_it0"] = self.allParams.get("bivar_it0",3)
self.allParams["bivar_tol"] = self.allParams.get("bivar_tol",1e-3)
self.allParams["bivar_max_it"] = self.allParams.get("bivar_max_it",10)
def predict(self,X):
pass
"""
This function is just a combination of Calling
setYX,
then iterating through bivar_max_it iterations of calling
calculateU and calculateW
"""
def process(self,Y,X=None,Xt=None,tests=None):
self.setYX(Y,X,Xt)
bivariter = 0
sumSSE = 0
esiter = list()
es.state()["iterations"] = esiter
# in the first iteration we calculate W by using ones on U
U = ssp.csc_matrix(ones(self.u.shape))
while True:
esiterdict = dict()
esiterdict["i"] = bivariter
logger.debug("Starting iteration: %d"%bivariter)
bivariter += 1
W,w_bias,err = self.calculateW(U,tests=tests)
esiterdict["w"] = W
esiterdict["w_sparcity"] = (abs(W) > 0).sum()
esiterdict["w_bias"] = w_bias
esiterdict["w_test_err"] = err
if "test" in err: logger.debug("W sparcity=%d,test_total_err=%2.2f,test_err=%s"%(esiterdict["w_sparcity"],err['test']["totalsse"],str(err['test']["diffsse"])))
W = ssp.csc_matrix(W)
U,u_bias,err = self.calculateU(W,tests=tests)
esiterdict["u"] = U
esiterdict["u_sparcity"] = (abs(U) > 0).sum()
esiterdict["u_bias"] = u_bias
esiterdict["u_test_err"] = err
if "test" in err: logger.debug("U sparcity=%d,test_total_err=%2.2f,test_err=%s"%(esiterdict["u_sparcity"],err['test']["totalsse"],str(err['test']["diffsse"])))
U = ssp.csc_matrix(U)
self.u = U
self.w = W
self.w_bias = w_bias
self.u_bias = u_bias
esiter += [esiterdict]
if self.allParams['bivar_max_it'] <= bivariter:
break
return sumSSE
def optimise_lambda(self, lambda_w, lambda_u, Yparts, Xparts,w_lambda=None,u_lambda=None):
logger.debug("... expanding Yparts")
Yparts = Yparts.apply(BatchBivariateLearner._expandY)
ls = LambdaSearch(self.part_eval)
ntasks = Yparts.train_all.shape[1]
ndays = Yparts.train_all.shape[0]/ntasks
nusers = Xparts.train_all.shape[1]/ndays
u = ssp.csc_matrix(ones((nusers,ntasks)))
logger.debug("... Preparing VPrime")
Vprime_parts = Xparts.apply(
BatchBivariateLearner._calculateVprime,u
)
if w_lambda is None:
logger.debug("... Optimising lambda for w")
ls.optimise(self.w_func,lambda_w,Vprime_parts,Yparts,name="w")
else:
logger.debug("... Setting hardcoded w: %2.2f"%w_lambda)
self.w_func.params['lambda1'] = w_lambda
logger.debug("... Calculating w with optimal lambda")
w,bias = self.w_func.call(Vprime_parts.train_all,Yparts.train_all)
w = ssp.csc_matrix(w)
logger.debug("... Preparing Dprime")
Dprime_parts = Xparts.apply(
BatchBivariateLearner._calculateDprime,w,u.shape
)
if u_lambda is None:
logger.debug("... Optimising lambda for u")
ls.optimise(self.u_func, lambda_u, Dprime_parts, Yparts,name="u")
else:
logger.debug("... Setting hardcoded w: %2.2f"%u_lambda)
self.u_func.params['lambda1'] = u_lambda
return [(u,self.u_func.params['lambda1']),(w,self.w_func.params['lambda1'])]
"""
The number of tasks is the columns of Y
The number of days is the rows of Y
The number of users is the columns of X (or the rows of Xt) over the number of days
Put another way the columns of X contain users batched by days
The number of words is the rows of X (or the columns of Xt)
"""
def setYX(self,Y,X=None,Xt=None):
X,Xt = BatchBivariateLearner._initX(X,Xt)
Y = np.asfortranarray(Y)
self.X = X
self.Xt = Xt
self.nusers = X.shape[1]/Y.shape[0]
self.nwords = X.shape[0]
self.ntasks = Y.shape[1]
self.ndays = Y.shape[0]
self.Yexpanded = self._expandY(Y)
logger.debug("(ndays=%d,ntasks=%d,nusers=%d,nwords=%d)"%(
self.ndays,self.ntasks,self.nusers,self.nwords)
)
self.u = ssp.csc_matrix(zeros((self.nusers,self.ntasks)))
self.w = ssp.csc_matrix(zeros((self.nwords,self.ntasks)))
def calculateW(self,U=None,tests=None):
if U is None: U = self.u
Vprime = BatchBivariateLearner._calculateVprime(self.X,U)
logger.debug("Calling w_func: %s"%self.w_func)
W,w_bias = self.w_func.call(Vprime,self.Yexpanded)
err = self.part_eval.evaluate(Vprime,self.Yexpanded,W,w_bias)
testerr = {"train_all":err}
if tests is not None:
for testName,(testX,testY) in tests.items():
testerr[testName] = self.part_eval.evaluate(
self._calculateVprime(testX,U),
self._expandY(testY),
W,w_bias
)
return W,w_bias,testerr
def calculateU(self,W=None,tests=None):
if W is None: W = self.w
Dprime = BatchBivariateLearner._calculateDprime(self.X,W,self.u.shape)
logger.debug("Calling u_func: %s"%self.u_func)
U,u_bias = self.u_func.call(Dprime,self.Yexpanded)
err = self.part_eval.evaluate(Dprime,self.Yexpanded,U,u_bias)
testerr = {"train_all":err}
if tests is not None:
for testName,(testX,testY) in tests.items():
testerr[testName] = self.part_eval.evaluate(
self._calculateDprime(testX,W,self.u.shape),
self._expandY(testY),
U,u_bias
)
return U,u_bias,testerr
@classmethod
def _expandY(cls,Y):
"""
We expand Y s.t. the values of Y for each task t
are held in the diagonals of a t x t matrix whose
other values are NaN
"""
Yexpanded = ones(
(
multiply(*Y.shape),
Y.shape[1]
)
) * nan
for x in range(Y.shape[1]):
ind = x * Y.shape[0];
indnext = (x+1) *Y.shape[0];
Yexpanded[ind:indnext,x] = Y[:,x];
return np.asfortranarray(Yexpanded)
@classmethod
def _initX(self,X=None,Xt=None):
if X is None and Xt is None:
raise Exception("At least one of X or Xt must be provided")
if Xt is None:
Xt = ssp.csc_matrix(X.transpose())
if X is None:
X = ssp.csc_matrix(Xt.transpose())
if not ssp.issparse(X) or not ssp.issparse(Xt):
raise Exception("X or Xt provided is not sparse, failing")
return X,Xt
@classmethod
def _cols_for_day(cls,d,nusers):
return slice(d*nusers,(d+1)*nusers)
@classmethod
def _rows_for_day(cls,d,ntasks):
return slice(d*ntasks,(d+1)*ntasks)
@classmethod
def _user_day_slice(cls,nusers):
def exp_slice_func(dp,dir):
parts = []
for d in dp:
dslc = BatchBivariateLearner._cols_for_day(d,nusers)
drng = range(dslc.start,dslc.stop)
parts += [x for x in drng]
if dir is "row":
return (parts,slice(None,None))
else:
return (slice(None,None),parts)
return exp_slice_func
"""
Expects an X such that users are held in the columns
and a U which weights each user for each task
"""
@classmethod
def _calculateVprime(cls, X, U):
# logger.debug("Preparing Vprime (X . U)")
nu = U.shape[0]
ndays = X.shape[1]/nu
# stack in the columns the (word,days) matricies for each task
# so the dimensions are (word,days*tasks).
# we then transpose such that the days*tasks are in the columns
# and the words in the rows resulting in (days*tasks,word)
return ssp.hstack([
# For every day, extract the day's sub matrix of user/word weights
# weight each user's words by the user's weight
# ends up with a (words,days) matrix (csr)
ssp.hstack([
X[:,cls._cols_for_day(d,nu)].dot(U[:,t:t+1])
for d in range(ndays)
],format="csr")
for t in range(U.shape[1])
],format="csr").transpose()
"""
Expects an X such that users are held in the columns
and a W which weights each word for each task
"""
@classmethod
def _calculateDprime(cls, X, W, Ushape):
# logger.debug("Preparing Dprime (X . W)")
nu = Ushape[0]
ndays = X.shape[1]/nu
# stack in the columns the (days,user) matricies for each task
# so the dimensions are (days*tasks,user).
return ssp.vstack([
# For every day, extract the day's sub matrix of
# user/word weights but now transpose
# weight each word's users by the word's weight
# ends up with a (days,user) matrix (csr)
ssp.hstack([
X[:,cls._cols_for_day(d,nu)].transpose().dot(W[:,t:t+1])
for d in range(ndays)
],format="csc").transpose()
for t in range(W.shape[1])
],format="csc")
@classmethod
def XYparts(self,fold,X,Y):
Yparts = fold.parts(Y)
Xparts = fold.parts(
X,dir="col",
slicefunc=BatchBivariateLearner._user_day_slice(X.shape[1]/Y.shape[0])
)
return Xparts,Yparts
class BatchBivariateLearner(OnlineLearner):
"""
For every X,Y pair, add to an existing set of X,Y and relearn the model
from scratch
All data recieved is collected and recompiled into a new numpy vector
every time. This gives best conceivable result for a linear system
given this optimisation scheme
"""
def __init__(self, w_spams_func, u_spams_func, **other_params):
super(BatchBivariateLearner, self).__init__()
self.allParams = other_params
self.initDefaults()
self.elementsSeen = 0
self.X = None
self.w = None
self.u = None
self.w_bias = None
self.u_bias = None
self.bias = None
self.change_eval = BiMeanSquareEval(self)
self.part_eval = RootMeanEval()
self.w_func = w_spams_func
self.u_func = u_spams_func
def initDefaults(self):
self.allParams["bivar_it0"] = self.allParams.get("bivar_it0", 3)
self.allParams["bivar_tol"] = self.allParams.get("bivar_tol", 1e-3)
self.allParams["bivar_max_it"] = self.allParams.get("bivar_max_it", 10)
def predict(self, X):
pass
"""
This function is just a combination of Calling
setYX,
then iterating through bivar_max_it iterations of calling
calculateU and calculateW
"""
def process(self, Y, X=None, Xt=None, tests=None):
self.setYX(Y, X, Xt)
bivariter = 0
sumSSE = 0
esiter = list()
es.state()["iterations"] = esiter
# in the first iteration we calculate W by using ones on U
U = ssp.csc_matrix(ones(self.u.shape))
while True:
esiterdict = dict()
esiterdict["i"] = bivariter
logger.debug("Starting iteration: %d" % bivariter)
bivariter += 1
W, w_bias, err = self.calculateW(U, tests=tests)
esiterdict["w"] = W
esiterdict["w_sparcity"] = (abs(W) > 0).sum()
esiterdict["w_bias"] = w_bias
esiterdict["w_test_err"] = err
if "test" in err:
logger.debug(
"W sparcity=%d,test_total_err=%2.2f,test_err=%s" %
(esiterdict["w_sparcity"], err['test']["totalsse"],
str(err['test']["diffsse"])))
W = ssp.csc_matrix(W)
U, u_bias, err = self.calculateU(W, tests=tests)
esiterdict["u"] = U
esiterdict["u_sparcity"] = (abs(U) > 0).sum()
esiterdict["u_bias"] = u_bias
esiterdict["u_test_err"] = err
if "test" in err:
logger.debug(
"U sparcity=%d,test_total_err=%2.2f,test_err=%s" %
(esiterdict["u_sparcity"], err['test']["totalsse"],
str(err['test']["diffsse"])))
U = ssp.csc_matrix(U)
self.u = U
self.w = W
self.w_bias = w_bias
self.u_bias = u_bias
esiter += [esiterdict]
if self.allParams['bivar_max_it'] <= bivariter:
break
return sumSSE
def optimise_lambda(self,
lambda_w,
lambda_u,
Yparts,
Xparts,
w_lambda=None,
u_lambda=None):
logger.debug("... expanding Yparts")
Yparts = Yparts.apply(BatchBivariateLearner._expandY)
ls = LambdaSearch(self.part_eval)
ntasks = Yparts.train_all.shape[1]
ndays = Yparts.train_all.shape[0] / ntasks
nusers = Xparts.train_all.shape[1] / ndays
u = ssp.csc_matrix(ones((nusers, ntasks)))
logger.debug("... Preparing VPrime")
Vprime_parts = Xparts.apply(BatchBivariateLearner._calculateVprime, u)
if w_lambda is None:
logger.debug("... Optimising lambda for w")
ls.optimise(self.w_func, lambda_w, Vprime_parts, Yparts, name="w")
else:
logger.debug("... Setting hardcoded w: %2.2f" % w_lambda)
self.w_func.params['lambda1'] = w_lambda
logger.debug("... Calculating w with optimal lambda")
w, bias = self.w_func.call(Vprime_parts.train_all, Yparts.train_all)
w = ssp.csc_matrix(w)
logger.debug("... Preparing Dprime")
Dprime_parts = Xparts.apply(BatchBivariateLearner._calculateDprime, w,
u.shape)
if u_lambda is None:
logger.debug("... Optimising lambda for u")
ls.optimise(self.u_func, lambda_u, Dprime_parts, Yparts, name="u")
else:
logger.debug("... Setting hardcoded w: %2.2f" % u_lambda)
self.u_func.params['lambda1'] = u_lambda
return [(u, self.u_func.params['lambda1']),
(w, self.w_func.params['lambda1'])]
"""
The number of tasks is the columns of Y
The number of days is the rows of Y
The number of users is the columns of X (or the rows of Xt) over the number of days
Put another way the columns of X contain users batched by days
The number of words is the rows of X (or the columns of Xt)
"""
def setYX(self, Y, X=None, Xt=None):
X, Xt = BatchBivariateLearner._initX(X, Xt)
Y = np.asfortranarray(Y)
self.X = X
self.Xt = Xt
self.nusers = X.shape[1] / Y.shape[0]
self.nwords = X.shape[0]
self.ntasks = Y.shape[1]
self.ndays = Y.shape[0]
self.Yexpanded = self._expandY(Y)
logger.debug("(ndays=%d,ntasks=%d,nusers=%d,nwords=%d)" %
(self.ndays, self.ntasks, self.nusers, self.nwords))
self.u = ssp.csc_matrix(zeros((self.nusers, self.ntasks)))
self.w = ssp.csc_matrix(zeros((self.nwords, self.ntasks)))
def calculateW(self, U=None, tests=None):
if U is None: U = self.u
Vprime = BatchBivariateLearner._calculateVprime(self.X, U)
logger.debug("Calling w_func: %s" % self.w_func)
W, w_bias = self.w_func.call(Vprime, self.Yexpanded)
err = self.part_eval.evaluate(Vprime, self.Yexpanded, W, w_bias)
testerr = {"train_all": err}
if tests is not None:
for testName, (testX, testY) in tests.items():
testerr[testName] = self.part_eval.evaluate(
self._calculateVprime(testX, U), self._expandY(testY), W,
w_bias)
return W, w_bias, testerr
def calculateU(self, W=None, tests=None):
if W is None: W = self.w
Dprime = BatchBivariateLearner._calculateDprime(
self.X, W, self.u.shape)
logger.debug("Calling u_func: %s" % self.u_func)
U, u_bias = self.u_func.call(Dprime, self.Yexpanded)
err = self.part_eval.evaluate(Dprime, self.Yexpanded, U, u_bias)
testerr = {"train_all": err}
if tests is not None:
for testName, (testX, testY) in tests.items():
testerr[testName] = self.part_eval.evaluate(
self._calculateDprime(testX, W, self.u.shape),
self._expandY(testY), U, u_bias)
return U, u_bias, testerr
@classmethod
def _expandY(cls, Y):
"""
We expand Y s.t. the values of Y for each task t
are held in the diagonals of a t x t matrix whose
other values are NaN
"""
Yexpanded = ones((multiply(*Y.shape), Y.shape[1])) * nan
for x in range(Y.shape[1]):
ind = x * Y.shape[0]
indnext = (x + 1) * Y.shape[0]
Yexpanded[ind:indnext, x] = Y[:, x]
return np.asfortranarray(Yexpanded)
@classmethod
def _initX(self, X=None, Xt=None):
if X is None and Xt is None:
raise Exception("At least one of X or Xt must be provided")
if Xt is None:
Xt = ssp.csc_matrix(X.transpose())
if X is None:
X = ssp.csc_matrix(Xt.transpose())
if not ssp.issparse(X) or not ssp.issparse(Xt):
raise Exception("X or Xt provided is not sparse, failing")
return X, Xt
@classmethod
def _cols_for_day(cls, d, nusers):
return slice(d * nusers, (d + 1) * nusers)
@classmethod
def _rows_for_day(cls, d, ntasks):
return slice(d * ntasks, (d + 1) * ntasks)
@classmethod
def _user_day_slice(cls, nusers):
def exp_slice_func(dp, dir):
parts = []
for d in dp:
dslc = BatchBivariateLearner._cols_for_day(d, nusers)
drng = range(dslc.start, dslc.stop)
parts += [x for x in drng]
if dir is "row":
return (parts, slice(None, None))
else:
return (slice(None, None), parts)
return exp_slice_func
"""
Expects an X such that users are held in the columns
and a U which weights each user for each task
"""
@classmethod
def _calculateVprime(cls, X, U):
# logger.debug("Preparing Vprime (X . U)")
nu = U.shape[0]
ndays = X.shape[1] / nu
# stack in the columns the (word,days) matricies for each task
# so the dimensions are (word,days*tasks).
# we then transpose such that the days*tasks are in the columns
# and the words in the rows resulting in (days*tasks,word)
return ssp.hstack(
[
# For every day, extract the day's sub matrix of user/word weights
# weight each user's words by the user's weight
# ends up with a (words,days) matrix (csr)
ssp.hstack([
X[:, cls._cols_for_day(d, nu)].dot(U[:, t:t + 1])
for d in range(ndays)
],
format="csr") for t in range(U.shape[1])
],
format="csr").transpose()
"""
Expects an X such that users are held in the columns
and a W which weights each word for each task
"""
@classmethod
def _calculateDprime(cls, X, W, Ushape):
# logger.debug("Preparing Dprime (X . W)")
nu = Ushape[0]
ndays = X.shape[1] / nu
# stack in the columns the (days,user) matricies for each task
# so the dimensions are (days*tasks,user).
return ssp.vstack(
[
# For every day, extract the day's sub matrix of
# user/word weights but now transpose
# weight each word's users by the word's weight
# ends up with a (days,user) matrix (csr)
ssp.hstack([
X[:, cls._cols_for_day(d, nu)].transpose().dot(
W[:, t:t + 1]) for d in range(ndays)
],
format="csc").transpose() for t in range(W.shape[1])
],
format="csc")
@classmethod
def XYparts(self, fold, X, Y):
Yparts = fold.parts(Y)
Xparts = fold.parts(X,
dir="col",
slicefunc=BatchBivariateLearner._user_day_slice(
X.shape[1] / Y.shape[0]))
return Xparts, Yparts