Ejemplo n.º 1
0
def create_hyperopt_files(experiments_file_name):
    ## Get templates and Variants
    config_strings = create_config_strings(experiments_file_name)
    config_objects = create_config_objects(config_strings)
    templates, variants = create_templates_variants_from_config_objects(
        config_objects)

    ## Create template string and save to file
    template_str = "{\n    templates: {\n"
    for key in templates:
        template_str += "        {:s}: {:s},\n".format(key, templates[key])

    template_str += "}}\n\n"

    with open('hyperopt_template.yaml', 'w') as template_file:
        template_file.write(template_str)

    ## Create parameter ranges and save to .pcs-file

    # Fold param variants into one dict param -> list of possibilities
    parameter_ranges = dict()
    for param_dict in variants:
        for key in param_dict:
            if key in parameter_ranges and (param_dict[key]
                                            not in parameter_ranges[key]):
                parameter_ranges[key].append(param_dict[key])
            if key not in parameter_ranges:
                parameter_ranges[key] = [param_dict[key]]

    # Delete unnecessary stuff, add template name reminder
    parameter_ranges.pop('dataset_filename')
    parameter_ranges.pop('save_path')
    parameter_ranges['template_name'] = ['!ADD_TEMPLATE_FILE_NAME!']
    # Build string
    hyperopt_param_string = ""
    for key, values in parameter_ranges.iteritems():
        # take middle value as default value
        default_str = "[{:s}]".format(str(values[len(values) // 2]))
        if len(values) == 1:
            val_str = "{{{:s}}}".format(str(values[0]))
        else:
            is_integer = False
            if all(isinstance(val, numbers.Number) for val in values):
                val_str = "[{:s}, {:s}]".format(str(values[0]),
                                                str(values[-1]))
                is_integer = all(val.is_integer() for val in values)
                if (is_integer):
                    default_str += 'i'
            else:
                val_str = str(values).replace('(', '{').replace(')', '}')
        line = "{:30s} {:30s} {:s}\n".format(str(key), val_str, default_str)

        line = line.replace("$", "**")
        # correct indentation
        line = line.replace(" [**", "[**")
        hyperopt_param_string += line

        with open('hyperopt_params.pcs', 'w') as param_file:
            param_file.write(hyperopt_param_string)
def create_hyperopt_files(experiments_file_name):
    ## Get templates and Variants
    config_strings = create_config_strings(experiments_file_name)
    config_objects = create_config_objects(config_strings)
    templates, variants = create_templates_variants_from_config_objects(config_objects)
    
    
    ## Create template string and save to file
    template_str = "{\n    templates: {\n"
    for key in templates:
        template_str += "        {:s}: {:s},\n".format(key, templates[key])
        
    template_str += "}}\n\n"
    
    with open('hyperopt_template.yaml', 'w') as template_file:
        template_file.write(template_str)


    ## Create parameter ranges and save to .pcs-file
    
    # Fold param variants into one dict param -> list of possibilities    
    parameter_ranges = dict()
    for param_dict in variants:
        for key in param_dict:
            if key in parameter_ranges and (param_dict[key] not in parameter_ranges[key]):
                parameter_ranges[key].append(param_dict[key])
            if key not in parameter_ranges:
                parameter_ranges[key]  = [param_dict[key]]
            
    # Delete unnecessary stuff, add template name reminder
    parameter_ranges.pop('dataset_filename')
    parameter_ranges.pop('save_path')
    parameter_ranges['template_name'] = ['!ADD_TEMPLATE_FILE_NAME!']
    # Build string
    hyperopt_param_string = ""
    for key, values in parameter_ranges.iteritems():
        # take middle value as default value
        default_str = "[{:s}]".format(str(values[len(values) // 2]))
        if len(values) == 1:
            val_str = "{{{:s}}}".format(str(values[0]))
        else:
            is_integer = False
            if all(isinstance(val, numbers.Number) for val in values):
                val_str = "[{:s}, {:s}]".format(str(values[0]), str(values[-1]))
                is_integer = all(val.is_integer() for val in values)
                if (is_integer):
                    default_str += 'i'
            else:
                val_str = str(values).replace('(', '{').replace(')', '}')
        line =  "{:30s} {:30s} {:s}\n".format(str(key), val_str, default_str)
        
        line = line.replace("$", "**")
        # correct indentation
        line = line.replace(" [**", "[**")
        hyperopt_param_string += line
        
        with open('hyperopt_params.pcs', 'w') as param_file:
            param_file.write(hyperopt_param_string)
Ejemplo n.º 3
0
def train_hyperopt(params):
    """ Runs one fold with given parameters and returns test misclass."""
    lasagne.random.set_rng(RandomState(9859295))

    template_name = params.pop('template_name')
    params = adjust_params_for_hyperopt(params)

    config_strings = create_config_strings(template_name)
    config_objects = create_config_objects(config_strings)
    templates, _ = create_templates_variants_from_config_objects(
        config_objects)

    processed_templates, params_without_template_params = process_templates(
        templates, params)
    final_params = process_parameters_by_templates(
        params_without_template_params, processed_templates)

    # go to directory above this source-file
    main_template_filename = os.path.dirname(
        os.path.abspath(os.path.dirname(__file__)))
    # then complete path to config
    main_template_filename = os.path.join(main_template_filename, "configs",
                                          "eegnet_template.yaml")

    with (open(main_template_filename, 'r')) as main_template_file:
        main_template_str = main_template_file.read()

    final_params['original_params'] = 'dummy'
    train_str = Template(main_template_str).substitute(final_params)

    def do_not_load_constructor(loader, node):
        return None

    yaml.add_constructor(u'!DoNotLoad', do_not_load_constructor)
    modified_train_str = train_str.replace('layers: ', 'layers: !DoNotLoad ')
    train_dict = yaml_parse.load(modified_train_str)
    dataset = train_dict['dataset']
    dataset.load()
    dataset_provider = train_dict['dataset_provider']

    assert 'in_sensors' in train_str
    assert 'in_rows' in train_str
    assert 'in_cols' in train_str

    train_str = train_str.replace('in_sensors',
                                  str(dataset.get_topological_view().shape[1]))
    train_str = train_str.replace('in_rows',
                                  str(dataset.get_topological_view().shape[2]))
    train_str = train_str.replace('in_cols',
                                  str(dataset.get_topological_view().shape[3]))

    train_dict = yaml_parse.load(train_str)
    layers = train_dict['layers']
    final_layer = layers[-1]

    # turn off debug/info logging
    logging.getLogger("pylearn2").setLevel(logging.WARN)
    logging.getLogger("braindecode").setLevel(logging.WARN)
    exp = Experiment()
    exp.setup(final_layer, dataset_provider, **train_dict['exp_args'])
    exp.run()
    final_misclass = exp.monitor_chans['test_misclass'][-1]
    print("Result for")
    pprint(params)
    print("Final Test misclass: {:5.4f}".format(float(final_misclass)))
    return final_misclass
Ejemplo n.º 4
0
def train_hyperopt(params):
    """ Runs one fold with given parameters and returns test misclass."""
    lasagne.random.set_rng(RandomState(9859295))

    template_name = params.pop('template_name')    
    params = adjust_params_for_hyperopt(params)
    
    config_strings = create_config_strings(template_name)
    config_objects = create_config_objects(config_strings)
    templates, _ = create_templates_variants_from_config_objects(
        config_objects)
    
    
    processed_templates, params_without_template_params  = process_templates(
                templates, params)
    final_params = process_parameters_by_templates(params_without_template_params, 
        processed_templates)
    
    # go to directory above this source-file
    main_template_filename = os.path.dirname(os.path.abspath(os.path.dirname(
        __file__)))
    # then complete path to config
    main_template_filename = os.path.join(main_template_filename, "configs", 
        "eegnet_template.yaml")
    
    with (open(main_template_filename, 'r')) as main_template_file:
        main_template_str = main_template_file.read()
        
        
    final_params['original_params'] = 'dummy'
    train_str = Template(main_template_str).substitute(final_params)
    
    def do_not_load_constructor(loader, node):
        return None
    yaml.add_constructor(u'!DoNotLoad', do_not_load_constructor)
    modified_train_str = train_str.replace('layers: ', 'layers: !DoNotLoad ')
    train_dict = yaml_parse.load(modified_train_str) 
    dataset = train_dict['dataset'] 
    dataset.load()
    dataset_provider = train_dict['dataset_provider']
    
    assert 'in_sensors' in train_str
    assert 'in_rows' in train_str
    assert 'in_cols' in train_str
    
    train_str = train_str.replace('in_sensors',
        str(dataset.get_topological_view().shape[1]))
    train_str = train_str.replace('in_rows',
        str(dataset.get_topological_view().shape[2]))
    train_str = train_str.replace('in_cols', 
        str(dataset.get_topological_view().shape[3]))
    
    train_dict =  yaml_parse.load(train_str)
    layers = train_dict['layers']
    final_layer = layers[-1]

    # turn off debug/info logging
    logging.getLogger("pylearn2").setLevel(logging.WARN)
    logging.getLogger("braindecode").setLevel(logging.WARN)
    exp = Experiment()
    exp.setup(final_layer, dataset_provider, **train_dict['exp_args'])
    exp.run()
    final_misclass = exp.monitor_chans['test_misclass'][-1]
    print("Result for")
    pprint(params)
    print("Final Test misclass: {:5.4f}".format(float(final_misclass)))
    return final_misclass