def setup(interactive, not_relative, dry_run, reset, root_dir, testuser):
"""This will help you to setup cellpy."""
click.echo("[cellpy] (setup)")
# generate variables
init_filename = prmreader.create_custom_init_filename()
userdir, dst_file = prmreader.get_user_dir_and_dst(init_filename)
if dry_run:
click.echo(
"Create custom init filename and get userdir and destination")
click.echo(f"Got the following parameters:")
click.echo(f" - init_filename: {init_filename}")
click.echo(f" - userdir: {userdir}")
click.echo(f" - dst_file: {dst_file}")
click.echo(f" - not_relative: {not_relative}")
if not root_dir:
root_dir = userdir
# root_dir = pathlib.Path(os.getcwd())
root_dir = pathlib.Path(root_dir)
if dry_run:
click.echo(f" - root_dir: {root_dir}")
if testuser:
click.echo(f"[cellpy] (setup) DEV-MODE testuser: {testuser}")
init_filename = prmreader.create_custom_init_filename(testuser)
userdir = root_dir
dst_file = get_dst_file(userdir, init_filename)
click.echo(f"[cellpy] (setup) DEV-MODE userdir: {userdir}")
click.echo(f"[cellpy] (setup) DEV-MODE dst_file: {dst_file}")
if not pathlib.Path(dst_file).is_file():
reset = True
if interactive:
click.echo(" interactive mode ".center(80, "-"))
_update_paths(root_dir, not not_relative, dry_run=dry_run, reset=reset)
_write_config_file(userdir, dst_file, init_filename, dry_run)
_check(dry_run=dry_run)
else:
if reset:
_update_paths(userdir,
False,
dry_run=dry_run,
reset=True,
silent=True)
_write_config_file(userdir, dst_file, init_filename, dry_run)
_check(dry_run=dry_run)
def _main():
file_name = prmreader.create_custom_init_filename()
click.echo(file_name)
user_directory, destination_file_name = prmreader.get_user_dir_and_dst(file_name)
click.echo(user_directory)
click.echo(destination_file_name)
click.echo("trying to save it")
save_prm_file(destination_file_name + "_dummy")
click.echo(" Testing setup ".center(80, "="))
setup(["--interactive", "--reset"])
def _cli_setup_interactive():
from click.testing import CliRunner
if sys.platform == "win32":
root_dir = r"C:\Temp\cellpy_user"
else:
root_dir = "/Users/jepe/scripting/tmp/cellpy_test_user"
testuser = "******"
init_filename = prmreader.create_custom_init_filename(testuser)
dst_file = get_dst_file(root_dir, init_filename)
init_file = pathlib.Path(dst_file)
opts = list()
opts.append("setup")
opts.append("-i")
# opts.append("-nr")
opts.append("-r")
opts.extend(["-d", root_dir])
opts.extend(["-t", testuser])
input_str = "\n" # out
input_str += "\n" # rawdatadir
input_str += "\n" # cellpyfiles
input_str += "\n" # log
input_str += "\n" # examples
input_str += "\n" # dbfolder
input_str += "\n" # dbfile
runner = CliRunner()
result = runner.invoke(cli, opts, input=input_str)
click.echo(" out ".center(80, "."))
click.echo(result.output)
from pprint import pprint
pprint(prmreader.prms.Paths)
click.echo(" conf-file ".center(80, "."))
click.echo(init_file)
click.echo()
with init_file.open() as f:
for line in f.readlines():
click.echo(line.strip())