def install_local_packages(prefix, paths, verbose=False):
# copy packages to pkgs dir
pkgs_dir = config.pkgs_dirs[0]
dists = []
for src_path in paths:
assert src_path.endswith('.tar.bz2')
fn = basename(src_path)
dists.append(fn[:-8])
dst_path = join(pkgs_dir, fn)
if abspath(src_path) == abspath(dst_path):
continue
shutil.copyfile(src_path, dst_path)
actions = defaultdict(list)
actions['PREFIX'] = prefix
actions['op_order'] = RM_EXTRACTED, EXTRACT, UNLINK, LINK
for dist in dists:
actions[RM_EXTRACTED].append(dist)
actions[EXTRACT].append(dist)
if install.is_linked(prefix, dist):
actions[UNLINK].append(dist)
actions[LINK].append(dist)
execute_actions(actions, verbose=verbose)
depends = []
for dist in dists:
try:
with open(join(pkgs_dir, dist, 'info', 'index.json')) as fi:
meta = json.load(fi)
depends.extend(meta['depends'])
except (IOError, KeyError):
continue
print('depends: %r' % depends)
return depends
def install(prefix, specs, args, env, prune=False):
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
new_specs = []
channel_urls = set()
for elem in specs:
if "::" in elem:
channel_urls.add(elem.split("::")[0])
new_specs.append(elem.split("::")[-1])
else:
new_specs.append(elem)
specs = new_specs
channel_urls = list(channel_urls)
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
channel_urls = channel_urls + [chan for chan in env.channels if chan != "nodefaults"]
index = get_index(channel_urls=channel_urls, prepend="nodefaults" not in env.channels, prefix=prefix)
_channel_priority_map = prioritize_channels(channel_urls)
action_set = plan.install_actions_list(
prefix, index, specs, prune=prune, channel_priority_map=_channel_priority_map
)
with common.json_progress_bars(json=args.json and not args.quiet):
for actions in action_set:
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
raise LockError("Already locked: %s" % text_type(e))
else:
raise CondaRuntimeError("RuntimeError: %s" % e)
except SystemExit as e:
raise CondaSystemExit("Exiting", e)
def clone_bundle(path, prefix):
"""
Clone the bundle (located at `path`) by creating a new environment at
`prefix`.
The directory `path` is located in should be some temp directory or
some other directory OUTSITE /opt/anaconda (this function handles
copying the of the file if necessary for you). After calling this
funtion, the original file (at `path`) may be removed.
"""
assert not abspath(path).startswith(abspath(config.root_dir))
assert not isdir(prefix)
fn = basename(path)
assert re.match(r'share-[0-9a-f]{40}-\d+\.tar\.bz2$', fn), fn
dist = fn[:-8]
if not install.is_extracted(config.pkgs_dir, dist):
shutil.copyfile(path, join(config.pkgs_dir, dist + '.tar.bz2'))
plan.execute_plan(['%s %s' % (plan.EXTRACT, dist)])
assert install.is_extracted(config.pkgs_dir, dist)
with open(join(config.pkgs_dir, dist, 'info', 'index.json')) as fi:
meta = json.load(fi)
# for backwards compatibility, use "requires" when "depends" is not there
dists = ['-'.join(r.split())
for r in meta.get('depends', meta.get('requires'))
if not r.startswith('conda ')]
dists.append(dist)
actions = plan.ensure_linked_actions(dists, prefix)
index = get_index()
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=True)
os.unlink(join(prefix, 'conda-meta', dist + '.json'))
def clone_bundle(path, prefix=None, bundle_name=None):
"""
Clone the bundle (located at `path`) by creating a new environment at
`prefix` (unless prefix is None or the prefix directory already exists)
"""
try:
t = tarfile.open(path, 'r:*')
meta = json.load(t.extractfile('info/index.json'))
except tarfile.ReadError:
raise RuntimeError('bad tar archive: %s' % path)
except KeyError:
raise RuntimeError("no archive 'info/index.json' in: %s" % (path))
if prefix and not isdir(prefix):
for m in t.getmembers():
if m.path.startswith((BDP, 'info/')):
continue
t.extract(m, path=prefix)
dists = discard_conda('-'.join(s.split())
for s in meta.get('depends', []))
actions = plan.ensure_linked_actions(dists, prefix)
index = get_index()
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=True)
bundle_dir = abspath(expanduser('~/bundles/%s' %
(bundle_name or meta.get('bundle_name'))))
for m in t.getmembers():
if m.path.startswith(BDP):
targetpath = join(bundle_dir, m.path[len(BDP):])
t._extract_member(m, targetpath)
t.close()
def create_env(prefix, specs, clear_cache=True, verbose=True, channel_urls=(),
override_channels=False):
'''
Create a conda envrionment for the given prefix and specs.
'''
if not isdir(config.bldpkgs_dir):
os.makedirs(config.bldpkgs_dir)
update_index(config.bldpkgs_dir)
if specs: # Don't waste time if there is nothing to do
if clear_cache:
# remove the cache such that a refetch is made,
# this is necessary because we add the local build repo URL
fetch_index.cache = {}
index = get_index(channel_urls=[url_path(config.croot)] + list(channel_urls),
prepend=not override_channels)
warn_on_old_conda_build(index)
cc.pkgs_dirs = cc.pkgs_dirs[:1]
actions = plan.install_actions(prefix, index, specs)
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=verbose)
# ensure prefix exists, even if empty, i.e. when specs are empty
if not isdir(prefix):
os.makedirs(prefix)
def create_env(prefix, specs, clear_cache=True):
'''
Create a conda envrionment for the given prefix and specs.
'''
specs = list(specs)
for feature, value in feature_list:
if value:
specs.append('%s@' % feature)
for d in config.bldpkgs_dirs:
if not isdir(d):
os.makedirs(d)
update_index(d)
if specs: # Don't waste time if there is nothing to do
index = get_build_index(clear_cache=True)
warn_on_old_conda_build(index)
cc.pkgs_dirs = cc.pkgs_dirs[:1]
actions = plan.install_actions(prefix, index, specs)
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=verbose)
# ensure prefix exists, even if empty, i.e. when specs are empty
if not isdir(prefix):
os.makedirs(prefix)
def execute(args, parser):
import sys
import conda.plan as plan
from conda.api import get_index
from conda.cli import pscheck
from conda.install import rm_rf, linked
if not (args.all or args.package_names):
sys.exit('Error: no package names supplied,\n'
' try "conda remove -h" for more details')
prefix = common.get_prefix(args)
common.check_write('remove', prefix)
index = None
if args.features:
channel_urls = args.channel or ()
common.ensure_override_channels_requires_channel(args)
index = get_index(channel_urls=channel_urls,
prepend=not args.override_channels)
features = set(args.package_names)
actions = plan.remove_features_actions(prefix, index, features)
elif args.all:
if plan.is_root_prefix(prefix):
sys.exit('Error: cannot remove root environment,\n'
' add -n NAME or -p PREFIX option')
actions = {plan.PREFIX: prefix,
plan.UNLINK: sorted(linked(prefix))}
else:
specs = common.specs_from_args(args.package_names)
if (plan.is_root_prefix(prefix) and
common.names_in_specs(common.root_no_rm, specs)):
sys.exit('Error: cannot remove %s from root environment' %
', '.join(common.root_no_rm))
actions = plan.remove_actions(prefix, specs)
if plan.nothing_to_do(actions):
if args.all:
rm_rf(prefix)
return
sys.exit('Error: no packages found to remove from '
'environment: %s' % prefix)
print()
print("Package plan for package removal in environment %s:" % prefix)
plan.display_actions(actions)
if not pscheck.main(args):
common.confirm_yn(args)
plan.execute_actions(actions, index, verbose=not args.quiet)
if args.all:
rm_rf(prefix)
def execute(args, parser):
import sys
from os.path import exists
import conda.plan as plan
from conda.api import get_index
if len(args.package_specs) == 0 and not args.file:
sys.exit('Error: too few arguments, must supply command line '
'package specs or --file')
common.ensure_name_or_prefix(args, 'create')
prefix = common.get_prefix(args)
if exists(prefix):
if args.prefix:
raise RuntimeError("'%s' already exists, must supply new "
"directory for -p/--prefix" % prefix)
else:
raise RuntimeError("'%s' already exists, must supply new "
"directory for -n/--name" % prefix)
if args.file:
specs = common.specs_from_file(args.file)
else:
specs = common.specs_from_args(args.package_specs)
common.check_specs(prefix, specs)
channel_urls = args.channel or ()
common.ensure_override_channels_requires_channel(args)
index = get_index(channel_urls=channel_urls, prepend=not args.override_channels)
actions = plan.install_actions(prefix, index, specs)
if plan.nothing_to_do(actions):
print('No matching packages could be found, nothing to do')
return
print()
print("Package plan for creating environment at %s:" % prefix)
plan.display_actions(actions, index)
common.confirm_yn(args)
plan.execute_actions(actions, index, verbose=not args.quiet)
if sys.platform != 'win32':
activate_name = prefix
if args.name:
activate_name = args.name
print("#")
print("# To activate this environment, use:")
print("# $ source activate %s" % activate_name)
print("#")
print("# To deactivate this environment, use:")
print("# $ source deactivate")
print("#")
def execute(args, parser):
import conda.plan as plan
from conda.api import get_index
from conda.cli import pscheck
prefix = common.get_prefix(args)
# handle explict installs of conda packages
if args.packages and all(s.endswith('.tar.bz2') for s in args.packages):
from conda.misc import install_local_packages
install_local_packages(prefix, args.packages, verbose=not args.quiet)
return
if any(s.endswith('.tar.bz2') for s in args.packages):
raise RuntimeError("cannot mix specifications with conda package "
"filenames")
if args.force:
args.no_deps = True
if args.file:
specs = common.specs_from_file(args.file)
else:
specs = common.specs_from_args(args.packages)
common.check_specs(prefix, specs)
spec_names = set(s.split()[0] for s in specs)
if args.no_deps:
only_names = spec_names
else:
only_names = None
common.ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
index = get_index(channel_urls=channel_urls, prepend=not
args.override_channels)
actions = plan.install_actions(prefix, index, specs,
force=args.force, only_names=only_names)
if plan.nothing_to_do(actions):
from conda.cli.main_list import list_packages
regex = '^(%s)$' % '|'.join(spec_names)
print('# All requested packages already installed.')
list_packages(prefix, regex)
return
print()
print("Package plan for installation in environment %s:" % prefix)
plan.display_actions(actions, index)
if not pscheck.main(args):
common.confirm_yn(args)
plan.execute_actions(actions, index, verbose=not args.quiet)
def app_install(fn, prefix=config.root_dir):
"""
Install the application `fn` into prefix (which defauts to the root
environment).
"""
import conda.plan as plan
index = get_index()
actions = plan.install_actions(prefix, index, [_fn2spec(fn)])
plan.execute_actions(actions, index)
def execute(args, parser):
import conda.config as config
import conda.plan as plan
from conda.api import get_index
from conda.misc import touch_nonadmin
common.ensure_name_or_prefix(args, 'create')
prefix = common.get_prefix(args, search=False)
check_prefix(prefix)
config.set_pkgs_dirs(prefix)
if args.clone:
if args.package_specs:
sys.exit('Error: did not expect any arguments for --clone')
clone(args.clone, prefix)
touch_nonadmin(prefix)
print_activate(args.name if args.name else prefix)
return
if not args.no_default_packages:
args.package_specs.extend(config.create_default_packages)
if len(args.package_specs) == 0 and not args.file:
sys.exit('Error: too few arguments, must supply command line '
'package specs or --file')
if args.file:
specs = common.specs_from_url(args.file)
else:
specs = common.specs_from_args(args.package_specs)
common.check_specs(prefix, specs)
channel_urls = args.channel or ()
common.ensure_override_channels_requires_channel(args)
index = get_index(channel_urls=channel_urls,
prepend=not args.override_channels)
actions = plan.install_actions(prefix, index, specs)
if plan.nothing_to_do(actions):
print('No matching packages could be found, nothing to do')
return
print()
print("Package plan for creating environment at %s:" % prefix)
plan.display_actions(actions, index)
common.confirm_yn(args)
plan.execute_actions(actions, index, verbose=not args.quiet)
touch_nonadmin(prefix)
print_activate(args.name if args.name else prefix)
def create_env(pref, specs):
if not isdir(bldpkgs_dir):
os.makedirs(bldpkgs_dir)
update_index(bldpkgs_dir)
fetch_index.cache = {}
index = get_index([url_path(config.croot)])
actions = plan.install_actions(pref, index, specs)
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=True)
# ensure prefix exists, even if empty, i.e. when specs are empty
if not isdir(pref):
os.makedirs(pref)
def execute(args, parser):
import sys
import conda.install as ci
import conda.config as config
import conda.plan as plan
from conda.api import get_index
from conda.cli import pscheck
if len(args.pkg_names) == 0:
sys.exit("""Error: no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update anaconda
""")
prefix = common.get_prefix(args)
config.set_pkgs_dirs(prefix)
linked = set(ci.name_dist(d) for d in ci.linked(prefix))
for name in args.pkg_names:
common.arg2spec(name)
if '=' in name:
sys.exit("Invalid package name: '%s'" % (name))
if name not in linked:
sys.exit("Error: package '%s' is not installed in %s" %
(name, prefix))
common.ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
index = get_index(channel_urls=channel_urls,
prepend=not args.override_channels)
actions = plan.install_actions(prefix, index, args.pkg_names)
if plan.nothing_to_do(actions):
from conda.cli.main_list import list_packages
regex = '^(%s)$' % '|'.join(args.pkg_names)
print('# All packages already at latest version, nothing to do.')
list_packages(prefix, regex)
return
print("Updating conda environment at %s" % prefix)
plan.display_actions(actions, index)
common.check_write('update', prefix)
if not pscheck.main(args):
common.confirm_yn(args)
plan.execute_actions(actions, index, verbose=not args.quiet)
def clone_env(prefix1, prefix2, verbose=True, quiet=False, index=None):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
dists = discard_conda(install.linked(prefix1))
if verbose:
print('Packages: %d' % len(dists))
print('Files: %d' % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
os.unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if islink(src):
os.symlink(os.readlink(src), dst)
continue
try:
with open(src, 'rb') as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode('utf-8')
s = s.replace(prefix1, prefix2)
data = s.encode('utf-8')
except UnicodeDecodeError: # data is binary
pass
with open(dst, 'wb') as fo:
fo.write(data)
shutil.copystat(src, dst)
if index is None:
index = get_index()
r = Resolve(index)
sorted_dists = r.dependency_sort(dists)
actions = ensure_linked_actions(sorted_dists, prefix2)
execute_actions(actions, index=index, verbose=not quiet)
return actions, untracked_files
def create_env(pref, specs):
if not isdir(bldpkgs_dir):
os.makedirs(bldpkgs_dir)
update_index(bldpkgs_dir)
# remove the cache such that a refetch is made,
# this is necessary because we add the local build repo URL
fetch_index.cache = {}
index = get_index([url_path(config.croot)])
actions = plan.install_actions(pref, index, specs)
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=True)
# ensure prefix exists, even if empty, i.e. when specs are empty
if not isdir(pref):
os.makedirs(pref)
def test_install_prune(self):
with make_temp_env("python=2 decorator") as prefix:
assert_package_is_installed(prefix, 'decorator')
# prune is a feature used by conda-env
# conda itself does not provide a public API for it
index = get_index_trap(prefix=prefix)
actions = plan.install_actions(prefix,
index,
specs=['flask'],
prune=True)
plan.execute_actions(actions, index, verbose=True)
assert_package_is_installed(prefix, 'flask')
assert not package_is_installed(prefix, 'decorator')
def force_extract_and_link(dists, prefix, verbose=False):
actions = defaultdict(list)
actions['PREFIX'] = prefix
actions['op_order'] = RM_EXTRACTED, EXTRACT, UNLINK, LINK
# maps names of installed packages to dists
linked = {install.name_dist(dist): dist for dist in install.linked(prefix)}
for dist in dists:
actions[RM_EXTRACTED].append(dist)
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = install.name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
execute_actions(actions, verbose=verbose)
def create_env(prefix, specs, clear_cache=True, debug=False):
'''
Create a conda envrionment for the given prefix and specs.
'''
if not debug:
# This squelches a ton of conda output that is not hugely relevant
logging.getLogger("conda.install").setLevel(logging.ERROR)
logging.getLogger("fetch").setLevel(logging.WARN)
logging.getLogger("print").setLevel(logging.WARN)
logging.getLogger("progress").setLevel(logging.WARN)
logging.getLogger("dotupdate").setLevel(logging.WARN)
logging.getLogger("stdoutlog").setLevel(logging.WARN)
logging.getLogger("requests.packages.urllib3.connectionpool").setLevel(logging.WARN)
specs = list(specs)
for feature, value in feature_list:
if value:
specs.append('%s@' % feature)
for d in config.bldpkgs_dirs:
if not isdir(d):
os.makedirs(d)
update_index(d)
if specs: # Don't waste time if there is nothing to do
# FIXME: stupid hack to put test prefix on PATH so that runtime libs can be found
old_path = os.environ['PATH']
os.environ['PATH'] = prepend_bin_path(os.environ.copy(), prefix, True)['PATH']
index = get_build_index(clear_cache=True)
warn_on_old_conda_build(index)
cc.pkgs_dirs = cc.pkgs_dirs[:1]
actions = plan.install_actions(prefix, index, specs)
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=debug)
os.environ['PATH'] = old_path
# ensure prefix exists, even if empty, i.e. when specs are empty
if not isdir(prefix):
os.makedirs(prefix)
if on_win:
shell = "cmd.exe"
else:
shell = "bash"
symlink_conda(prefix, sys.prefix, shell)
def create_env(prefix, specs, clear_cache=True, verbose=True, channel_urls=(), override_channels=False):
"""
Create a conda envrionment for the given prefix and specs.
"""
if not isdir(config.bldpkgs_dir):
os.makedirs(config.bldpkgs_dir)
update_index(config.bldpkgs_dir)
if specs: # Don't waste time if there is nothing to do
index = get_build_index(clear_cache=True, channel_urls=channel_urls, override_channels=override_channels)
warn_on_old_conda_build(index)
cc.pkgs_dirs = cc.pkgs_dirs[:1]
actions = plan.install_actions(prefix, index, specs)
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=verbose)
# ensure prefix exists, even if empty, i.e. when specs are empty
if not isdir(prefix):
os.makedirs(prefix)
def install(prefix, specs, args, env):
# TODO: do we need this?
common.check_specs(prefix, specs, json=args.json)
# TODO: support all various ways this happens
index = common.get_index_trap(channel_urls=env.channels)
actions = plan.install_actions(prefix, index, specs)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
error_type = "AlreadyLocked"
else:
error_type = "RuntimeError"
common.exception_and_exit(e, error_type=error_type, json=args.json)
except SystemExit as e:
common.exception_and_exit(e, json=args.json)
def clone_env(prefix1, prefix2, verbose=True, quiet=False):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
dists = discard_conda(install.linked(prefix1))
if verbose:
print('Packages: %d' % len(dists))
print('Files: %d' % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
os.unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
try:
with open(src, 'rb') as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode('utf-8')
s = s.replace(prefix1, prefix2)
data = s.encode('utf-8')
except UnicodeDecodeError: # data is binary
pass
with open(dst, 'wb') as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = ensure_linked_actions(dists, prefix2)
execute_actions(actions, index=get_index(), verbose=not quiet)
return actions, untracked_files
def app_uninstall(fn, prefix=config.root_dir):
"""
Uninstall application `fn` (but not its dependencies).
Like `conda remove fn`.
"""
import conda.cli.common as common
import conda.plan as plan
index = None
specs = [_fn2spec(fn)]
if plan.is_root_prefix(prefix) and common.names_in_specs(common.root_no_rm, specs):
raise ValueError("Cannot remove %s from the root environment" % ", ".join(common.root_no_rm))
actions = plan.remove_actions(prefix, specs, index=index)
if plan.nothing_to_do(actions):
raise ValueError("Nothing to do")
plan.execute_actions(actions, index)
def create_env(pref, specs, clear_cache=True, verbose=True):
'''
Create a conda envrionment for the given prefix and specs.
'''
if not isdir(config.bldpkgs_dir):
os.makedirs(config.bldpkgs_dir)
update_index(config.bldpkgs_dir)
if specs: # Don't waste time if there is nothing to do
if clear_cache:
# remove the cache such that a refetch is made,
# this is necessary because we add the local build repo URL
fetch_index.cache = {}
index = get_index([url_path(config.croot)])
cc.pkgs_dirs = cc.pkgs_dirs[:1]
actions = plan.install_actions(pref, index, specs)
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=verbose)
# ensure prefix exists, even if empty, i.e. when specs are empty
if not isdir(pref):
os.makedirs(pref)
def create_env(pref, specs, pypi=False):
if not isdir(bldpkgs_dir):
os.makedirs(bldpkgs_dir)
update_index(bldpkgs_dir)
# remove the cache such that a refetch is made,
# this is necessary because we add the local build repo URL
fetch_index.cache = {}
index = get_index([url_path(config.croot)])
cc.pkgs_dirs = cc.pkgs_dirs[:1]
if pypi:
from conda.from_pypi import install_from_pypi
specs = install_from_pypi(pref, index, specs)
actions = plan.install_actions(pref, index, specs)
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=True)
# ensure prefix exists, even if empty, i.e. when specs are empty
if not isdir(pref):
os.makedirs(pref)
def install(prefix, specs, args, env, prune=False):
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
new_specs = []
channel_urls = set()
for elem in specs:
if "::" in elem:
channel_urls.add(elem.split("::")[0])
new_specs.append(elem.split("::")[-1])
else:
new_specs.append(elem)
specs = new_specs
channel_urls = list(channel_urls)
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
channel_urls = channel_urls + [
chan for chan in env.channels if chan != 'nodefaults'
]
index = get_index(channel_urls=channel_urls,
prepend='nodefaults' not in env.channels,
prefix=prefix)
_channel_priority_map = prioritize_channels(channel_urls)
action_set = plan.install_actions_list(
prefix,
index,
specs,
prune=prune,
channel_priority_map=_channel_priority_map)
with common.json_progress_bars(json=args.json and not args.quiet):
for actions in action_set:
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
raise LockError('Already locked: %s' % text_type(e))
else:
raise CondaHTTPError('CondaHTTPError: %s' % e)
except SystemExit as e:
raise CondaSystemExit('Exiting', e)
def install(prefix, specs, args, env, prune=False):
# TODO: do we need this?
common.check_specs(prefix, specs, json=args.json)
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
index = common.get_index_trap(
channel_urls=[chan for chan in env.channels if chan != 'nodefaults'],
prepend='nodefaults' not in env.channels)
actions = plan.install_actions(prefix, index, specs, prune=prune)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
error_type = "AlreadyLocked"
else:
error_type = "RuntimeError"
common.exception_and_exit(e, error_type=error_type, json=args.json)
except SystemExit as e:
common.exception_and_exit(e, json=args.json)
def install_local_packages(prefix, paths, verbose=False):
# copy packages to pkgs dir
dists = []
for src_path in paths:
assert src_path.endswith('.tar.bz2')
fn = basename(src_path)
dists.append(fn[:-8])
dst_path = join(config.pkgs_dirs[0], fn)
if abspath(src_path) == abspath(dst_path):
continue
shutil.copyfile(src_path, dst_path)
actions = defaultdict(list)
actions['PREFIX'] = prefix
actions['op_order'] = RM_EXTRACTED, EXTRACT, UNLINK, LINK
for dist in dists:
actions[RM_EXTRACTED].append(dist)
actions[EXTRACT].append(dist)
if install.is_linked(prefix, dist):
actions[UNLINK].append(dist)
actions[LINK].append(dist)
execute_actions(actions, verbose=verbose)
def install(prefix, specs, args, env, prune=False):
# TODO: do we need this?
check_specs(prefix, specs, json=args.json)
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
index = get_index_trap(channel_urls=[chan for chan in env.channels
if chan != 'nodefaults'],
prepend='nodefaults' not in env.channels)
actions = plan.install_actions(prefix, index, specs, prune=prune)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
error_type = "AlreadyLocked"
else:
error_type = "RuntimeError"
exception_and_exit(e, error_type=error_type, json=args.json)
except SystemExit as e:
exception_and_exit(e, json=args.json)
def install(prefix, specs, args, env):
# TODO: do we need this?
common.check_specs(prefix, specs, json=args.json)
# TODO: support all various ways this happens
index = common.get_index_trap(channel_urls=env.channels)
actions = plan.install_actions(prefix, index, specs)
if plan.nothing_to_do(actions):
sys.stderr.write('# TODO handle more gracefully')
sys.exit(-1)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
error_type = "AlreadyLocked"
else:
error_type = "RuntimeError"
common.exception_and_exit(e, error_type=error_type, json=args.json)
except SystemExit as e:
common.exception_and_exit(e, json=args.json)
def install_local_packages(prefix, paths, verbose=False):
# copy packages to pkgs dir
dists = []
for src_path in paths:
assert src_path.endswith('.tar.bz2')
fn = basename(src_path)
dists.append(fn[:-8])
dst_path = join(config.pkgs_dirs[0], fn)
if abspath(src_path) == abspath(dst_path):
continue
shutil.copyfile(src_path, dst_path)
actions = defaultdict(list)
actions['PREFIX'] = prefix
actions['op_order'] = RM_EXTRACTED, EXTRACT, UNLINK, LINK
for dist in dists:
actions[RM_EXTRACTED].append(dist)
actions[EXTRACT].append(dist)
if install.is_linked(prefix, dist):
actions[UNLINK].append(dist)
actions[LINK].append(dist)
execute_actions(actions, verbose=verbose)
def clone_analysispackage(path, prefix=None, analysispackage_name=None, data_path=None):
"""
Clone the analysispackage (located at `path`) by creating a new environment at
`prefix` (unless prefix is None or the prefix directory already exists)
"""
try:
t = tarfile.open(path, 'r:*')
meta = json.load(t.extractfile('info/index.json'))
except tarfile.ReadError:
raise RuntimeError('bad tar archive: %s' % path)
except KeyError:
raise RuntimeError("no archive 'info/index.json' in: %s" % (path))
if prefix and isdir(prefix):
print ("erasing old environment at %s" % prefix)
shutil.rmtree(prefix)
if prefix and not isdir(prefix):
for m in t.getmembers():
if m.path.startswith((BDP, 'info/')):
continue
t.extract(m, path=prefix)
dists = discard_conda('-'.join(s.split())
for s in meta.get('depends', []))
actions = plan.ensure_linked_actions(dists, prefix)
index = get_index()
plan.display_actions(actions, index)
plan.execute_actions(actions, index, verbose=False)
if not data_path:
analysispackage_dir = abspath(expanduser('~/analysispackages/%s' %
(analysispackage_name or meta.get('analysispackage_name'))))
else:
analysispackage_dir = data_path
for m in t.getmembers():
if m.path.startswith(BDP):
targetpath = join(analysispackage_dir, m.path[len(BDP):])
t._extract_member(m, targetpath)
with open(join(data_path, ".metadata.json"), "w+") as f:
json.dump({'env' : prefix}, f)
t.close()
def app_uninstall(fn, prefix=config.root_dir):
"""
Uninstall application `fn` (but not its dependencies).
Like `conda remove fn`.
"""
import conda.cli.common as common
import conda.plan as plan
index = None
specs = [_fn2spec(fn)]
if (plan.is_root_prefix(prefix)
and common.names_in_specs(common.root_no_rm, specs)):
raise ValueError("Cannot remove %s from the root environment" %
', '.join(common.root_no_rm))
actions = plan.remove_actions(prefix, specs, index=index)
if plan.nothing_to_do(actions):
raise ValueError("Nothing to do")
plan.execute_actions(actions, index)
def old_clone_bundle(path, prefix):
"""
Clone the bundle (located at `path`) by creating a new environment at
`prefix`.
The directory `path` is located in should be some temp directory or
some other directory OUTSITE /opt/anaconda (this function handles
copying the of the file if necessary for you). After calling this
funtion, the original file (at `path`) may be removed.
"""
assert not abspath(path).startswith(abspath(config.root_dir))
assert not isdir(prefix)
fn = basename(path)
assert re.match(r'share-[0-9a-f]{40}-\d+\.tar\.bz2$', fn), fn
dist = fn[:-8]
pkgs_dir = config.pkgs_dirs[0]
if not install.is_extracted(pkgs_dir, dist):
shutil.copyfile(path, join(pkgs_dir, dist + '.tar.bz2'))
plan.execute_plan(['%s %s' % (plan.EXTRACT, dist)])
assert install.is_extracted(pkgs_dir, dist)
with open(join(pkgs_dir, dist, 'info', 'index.json')) as fi:
meta = json.load(fi)
# for backwards compatibility, use "requires" when "depends" is not there
dists = [
'-'.join(r.split())
for r in meta.get('depends', meta.get('requires', []))
if not r.startswith('conda ')
]
dists.append(dist)
actions = plan.ensure_linked_actions(dists, prefix)
index = get_index()
plan.execute_actions(actions, index, verbose=False)
os.unlink(join(prefix, 'conda-meta', dist + '.json'))
def clone_env(prefix1, prefix2, verbose=True):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
dists = install.linked(prefix1)
print('Packages: %d' % len(dists))
print('Files: %d' % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
os.unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
try:
with open(src, 'rb') as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode('utf-8')
s = s.replace(prefix1, prefix2)
data = s.encode('utf-8')
except UnicodeDecodeError: # data is binary
pass
with open(dst, 'wb') as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = ensure_linked_actions(dists, prefix2)
execute_actions(actions, index=get_index(), verbose=verbose)
def install(prefix, specs, args, data):
# TODO: do we need this?
common.check_specs(prefix, specs, json=args.json)
# TODO: support all various ways this happens
index = common.get_index_trap(
channel_urls=data.get('channels', ())
)
actions = plan.install_actions(prefix, index, specs)
if plan.nothing_to_do(actions):
sys.stderr.write('# TODO handle more gracefully')
sys.exit(-1)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
error_type = "AlreadyLocked"
else:
error_type = "RuntimeError"
common.exception_and_exit(e, error_type=error_type, json=args.json)
except SystemExit as e:
common.exception_and_exit(e, json=args.json)
def build(m,
post=None,
include_recipe=True,
keep_old_work=False,
need_source_download=True,
verbose=True,
dirty=False,
activate=True):
'''
Build the package with the specified metadata.
:param m: Package metadata
:type m: Metadata
:type post: bool or None. None means run the whole build. True means run
post only. False means stop just before the post.
:type keep_old_work: bool: Keep any previous work directory.
:type need_source_download: bool: if rendering failed to download source
(due to missing tools), retry here after build env is populated
'''
if (m.get_value('build/detect_binary_files_with_prefix')
or m.binary_has_prefix_files()) and not on_win:
# We must use a long prefix here as the package will only be
# installable into prefixes shorter than this one.
config.use_long_build_prefix = True
else:
# In case there are multiple builds in the same process
config.use_long_build_prefix = False
if m.skip():
print("Skipped: The %s recipe defines build/skip for this "
"configuration." % m.dist())
return
with Locked(cc.root_dir):
# If --keep-old-work, then move the contents of source.WORK_DIR to a
# temporary directory for the duration of the build.
# The source unpacking procedure is too varied and complex
# to allow this to be written cleanly (see source.get_dir() for example)
if keep_old_work:
old_WORK_DIR = tempfile.mkdtemp()
old_sub_dirs = [
name for name in os.listdir(source.WORK_DIR)
if os.path.isdir(os.path.join(source.WORK_DIR, name))
]
if len(old_sub_dirs):
print("Keeping old work directory backup: %s => %s" %
(old_sub_dirs, old_WORK_DIR))
for old_sub in old_sub_dirs:
shutil.move(os.path.join(source.WORK_DIR, old_sub),
old_WORK_DIR)
if post in [False, None]:
print("Removing old build environment")
print("BUILD START:", m.dist())
if on_win:
if isdir(config.short_build_prefix):
move_to_trash(config.short_build_prefix, '')
if isdir(config.long_build_prefix):
move_to_trash(config.long_build_prefix, '')
else:
rm_rf(config.short_build_prefix)
rm_rf(config.long_build_prefix)
# Display the name only
# Version number could be missing due to dependency on source info.
create_env(config.build_prefix,
[ms.spec for ms in m.ms_depends('build')])
if need_source_download:
# Execute any commands fetching the source (e.g., git) in the _build environment.
# This makes it possible to provide source fetchers (eg. git, hg, svn) as build
# dependencies.
m, need_source_download = parse_or_try_download(
m,
no_download_source=False,
force_download=True,
verbose=verbose,
dirty=dirty)
assert not need_source_download, "Source download failed. Please investigate."
if m.name() in [
i.rsplit('-', 2)[0] for i in linked(config.build_prefix)
]:
print("%s is installed as a build dependency. Removing." %
m.name())
index = get_build_index(clear_cache=False)
actions = plan.remove_actions(config.build_prefix, [m.name()],
index=index)
assert not plan.nothing_to_do(actions), actions
plan.display_actions(actions, index)
plan.execute_actions(actions, index)
print("Package:", m.dist())
assert isdir(source.WORK_DIR)
src_dir = source.get_dir()
contents = os.listdir(src_dir)
if contents:
print("source tree in:", src_dir)
else:
print("no source")
rm_rf(config.info_dir)
files1 = prefix_files()
for pat in m.always_include_files():
has_matches = False
for f in set(files1):
if fnmatch.fnmatch(f, pat):
print("Including in package existing file", f)
files1.discard(f)
has_matches = True
if not has_matches:
sys.exit(
"Error: Glob %s from always_include_files does not match any files"
% pat)
# Save this for later
with open(join(config.croot, 'prefix_files.txt'), 'w') as f:
f.write(u'\n'.join(sorted(list(files1))))
f.write(u'\n')
# Use script from recipe?
script = m.get_value('build/script', None)
if script:
if isinstance(script, list):
script = '\n'.join(script)
if on_win:
build_file = join(m.path, 'bld.bat')
if script:
build_file = join(source.get_dir(), 'bld.bat')
with open(join(source.get_dir(), 'bld.bat'), 'w') as bf:
bf.write(script)
import conda_build.windows as windows
windows.build(m, build_file, dirty=dirty, activate=activate)
else:
build_file = join(m.path, 'build.sh')
# There is no sense in trying to run an empty build script.
if isfile(build_file) or script:
env = environ.get_dict(m, dirty=dirty)
work_file = join(source.get_dir(), 'conda_build.sh')
if script:
with open(work_file, 'w') as bf:
bf.write(script)
if activate:
if isfile(build_file):
data = open(build_file).read()
else:
data = open(work_file).read()
with open(work_file, 'w') as bf:
bf.write("source activate {build_prefix}\n".format(
build_prefix=config.build_prefix))
bf.write(data)
else:
if not isfile(work_file):
shutil.copy(build_file, work_file)
os.chmod(work_file, 0o766)
if isfile(work_file):
cmd = [shell_path, '-x', '-e', work_file]
_check_call(cmd, env=env, cwd=src_dir)
if post in [True, None]:
if post:
with open(join(config.croot, 'prefix_files.txt'), 'r') as f:
files1 = set(f.read().splitlines())
get_build_metadata(m)
create_post_scripts(m)
create_entry_points(m.get_value('build/entry_points'))
assert not exists(config.info_dir)
files2 = prefix_files()
post_process(sorted(files2 - files1),
preserve_egg_dir=bool(
m.get_value('build/preserve_egg_dir')))
# The post processing may have deleted some files (like easy-install.pth)
files2 = prefix_files()
if any(config.meta_dir in join(config.build_prefix, f)
for f in files2 - files1):
sys.exit(
indent(
"""Error: Untracked file(s) %s found in conda-meta directory.
This error usually comes from using conda in the build script. Avoid doing this, as it
can lead to packages that include their dependencies.""" %
(tuple(f for f in files2 - files1 if config.meta_dir in
join(config.build_prefix, f)), )))
post_build(m, sorted(files2 - files1))
create_info_files(m,
sorted(files2 - files1),
include_recipe=bool(m.path) and include_recipe)
if m.get_value('build/noarch_python'):
import conda_build.noarch_python as noarch_python
noarch_python.transform(m, sorted(files2 - files1))
files3 = prefix_files()
fix_permissions(files3 - files1)
path = bldpkg_path(m)
t = tarfile.open(path, 'w:bz2')
def order(f):
# we don't care about empty files so send them back via 100000
fsize = os.stat(join(config.build_prefix, f)).st_size or 100000
# info/* records will be False == 0, others will be 1.
info_order = int(os.path.dirname(f) != 'info')
return info_order, fsize
# add files in order of a) in info directory, b) increasing size so
# we can access small manifest or json files without decompressing
# possible large binary or data files
for f in sorted(files3 - files1, key=order):
t.add(join(config.build_prefix, f), f)
t.close()
print("BUILD END:", m.dist())
# we're done building, perform some checks
tarcheck.check_all(path)
update_index(config.bldpkgs_dir)
else:
print("STOPPING BUILD BEFORE POST:", m.dist())
if keep_old_work and len(old_sub_dirs):
print("Restoring old work directory backup: %s :: %s => %s" %
(old_WORK_DIR, old_sub_dirs, source.WORK_DIR))
for old_sub in old_sub_dirs:
if os.path.exists(os.path.join(source.WORK_DIR, old_sub)):
print(
"Not restoring old source directory %s over new build's version"
% (old_sub))
else:
shutil.move(os.path.join(old_WORK_DIR, old_sub),
source.WORK_DIR)
shutil.rmtree(old_WORK_DIR, ignore_errors=True)
def build(m, get_src=True, verbose=True, post=None, channel_urls=(), override_channels=False):
"""
Build the package with the specified metadata.
:param m: Package metadata
:type m: Metadata
:param get_src: Should we download the source?
:type get_src: bool
:type post: bool or None. None means run the whole build. True means run
post only. False means stop just before the post.
"""
if m.get_value("build/detect_binary_files_with_prefix") or m.binary_has_prefix_files():
# We must use a long prefix here as the package will only be
# installable into prefixes shorter than this one.
config.use_long_build_prefix = True
else:
# In case there are multiple builds in the same process
config.use_long_build_prefix = False
if post in [False, None]:
print("Removing old build directory")
rm_rf(config.short_build_prefix)
rm_rf(config.long_build_prefix)
print("Removing old work directory")
rm_rf(source.WORK_DIR)
# Display the name only
# Version number could be missing due to dependency on source info.
print("BUILD START:", m.dist())
create_env(
config.build_prefix,
[ms.spec for ms in m.ms_depends("build")],
verbose=verbose,
channel_urls=channel_urls,
override_channels=override_channels,
)
if m.name() in [i.rsplit("-", 2)[0] for i in linked(config.build_prefix)]:
print("%s is installed as a build dependency. Removing." % m.name())
index = get_build_index(clear_cache=False, channel_urls=channel_urls, override_channels=override_channels)
actions = plan.remove_actions(config.build_prefix, [m.name()], index=index)
assert not plan.nothing_to_do(actions), actions
plan.display_actions(actions, index)
plan.execute_actions(actions, index)
if get_src:
source.provide(m.path, m.get_section("source"))
# Parse our metadata again because we did not initialize the source
# information before.
m.parse_again()
print("Package:", m.dist())
assert isdir(source.WORK_DIR)
src_dir = source.get_dir()
contents = os.listdir(src_dir)
if contents:
print("source tree in:", src_dir)
else:
print("no source")
rm_rf(config.info_dir)
files1 = prefix_files()
for rx in m.always_include_files():
pat = re.compile(rx)
has_matches = False
for f in set(files1):
if pat.match(f):
print("Including in package existing file", f)
files1.discard(f)
has_matches = True
if not has_matches:
sys.exit("Error: Regex %s from always_include_files does not match any files" % rx)
# Save this for later
with open(join(config.croot, "prefix_files.txt"), "w") as f:
f.write(u"\n".join(sorted(list(files1))))
f.write(u"\n")
if sys.platform == "win32":
import conda_build.windows as windows
windows.build(m)
else:
env = environ.get_dict(m)
build_file = join(m.path, "build.sh")
script = m.get_value("build/script", None)
if script:
if isinstance(script, list):
script = "\n".join(script)
build_file = join(source.get_dir(), "conda_build.sh")
with open(build_file, "w") as bf:
bf.write(script)
os.chmod(build_file, 0o766)
if exists(build_file):
cmd = ["/bin/bash", "-x", "-e", build_file]
_check_call(cmd, env=env, cwd=src_dir)
if post in [True, None]:
if post == True:
with open(join(config.croot, "prefix_files.txt"), "r") as f:
files1 = set(f.read().splitlines())
get_build_metadata(m)
create_post_scripts(m)
create_entry_points(m.get_value("build/entry_points"))
assert not exists(config.info_dir)
files2 = prefix_files()
post_process(sorted(files2 - files1), preserve_egg_dir=bool(m.get_value("build/preserve_egg_dir")))
# The post processing may have deleted some files (like easy-install.pth)
files2 = prefix_files()
assert not any(config.meta_dir in join(config.build_prefix, f) for f in files2 - files1)
post_build(m, sorted(files2 - files1))
create_info_files(m, sorted(files2 - files1), include_recipe=bool(m.path))
if m.get_value("build/noarch_python"):
import conda_build.noarch_python as noarch_python
noarch_python.transform(m, sorted(files2 - files1))
files3 = prefix_files()
fix_permissions(files3 - files1)
path = bldpkg_path(m)
t = tarfile.open(path, "w:bz2")
for f in sorted(files3 - files1):
t.add(join(config.build_prefix, f), f)
t.close()
print("BUILD END:", m.dist())
# we're done building, perform some checks
tarcheck.check_all(path)
update_index(config.bldpkgs_dir)
else:
print("STOPPING BUILD BEFORE POST:", m.dist())
def build(m,
verbose=True,
channel_urls=(),
override_channels=False,
wheel_dir="./build"):
'''
Build the package with the specified metadata.
:param m: Package metadata
:type m: Metadata
'''
if (m.get_value('build/detect_binary_files_with_prefix')
or m.binary_has_prefix_files()):
# We must use a long prefix here as the package will only be
# installable into prefixes shorter than this one.
config.use_long_build_prefix = True
else:
# In case there are multiple builds in the same process
config.use_long_build_prefix = False
if m.skip():
print("Skipped: The %s recipe defines build/skip for this "
"configuration." % m.dist())
return
print("Removing old build environment")
if on_win:
if isdir(config.short_build_prefix):
move_to_trash(config.short_build_prefix, '')
if isdir(config.long_build_prefix):
move_to_trash(config.long_build_prefix, '')
else:
rm_rf(config.short_build_prefix)
rm_rf(config.long_build_prefix)
print("Removing old work directory")
if on_win:
if isdir(source.WORK_DIR):
move_to_trash(source.WORK_DIR, '')
else:
rm_rf(source.WORK_DIR)
# Display the name only
# Version number could be missing due to dependency on source info.
print("BUILD START:", m.dist())
create_env(config.build_prefix, [ms.spec for ms in m.ms_depends('build')],
verbose=verbose,
channel_urls=channel_urls,
override_channels=override_channels)
if m.name() in [i.rsplit('-', 2)[0] for i in linked(config.build_prefix)]:
print("%s is installed as a build dependency. Removing." % m.name())
index = get_build_index(clear_cache=False,
channel_urls=channel_urls,
override_channels=override_channels)
actions = plan.remove_actions(config.build_prefix, [m.name()],
index=index)
assert not plan.nothing_to_do(actions), actions
plan.display_actions(actions, index)
plan.execute_actions(actions, index)
# downlaod source code...
source.provide(m.path, m.get_section('source'))
# Parse our metadata again because we did not initialize the source
# information before.
m.parse_again()
print("Package:", m.dist())
assert isdir(source.WORK_DIR)
src_dir = source.get_dir()
contents = os.listdir(src_dir)
if contents:
print("source tree in:", src_dir)
else:
print("no source")
rm_rf(config.info_dir)
files1 = prefix_files()
for pat in m.always_include_files():
has_matches = False
for f in set(files1):
if fnmatch.fnmatch(f, pat):
print("Including in package existing file", f)
files1.discard(f)
has_matches = True
if not has_matches:
sys.exit(
"Error: Glob %s from always_include_files does not match any files"
% pat)
# Save this for later
with open(join(config.croot, 'prefix_files.txt'), 'w') as f:
f.write(u'\n'.join(sorted(list(files1))))
f.write(u'\n')
print("Source dir: %s" % src_dir)
if sys.platform == 'win32':
windows_build(m)
else:
env = environ.get_dict(m)
build_file = join(m.path, 'build_wheel.sh')
if not isfile(build_file):
print("Using plain 'python setup.py bdist_wheel' as build script")
build_file = join(src_dir, 'build_wheel.sh')
with open(build_file, 'w') as fo:
fo.write('\n')
fo.write('# Autogenerated build command:\n')
fo.write('python setup.py bdist_wheel\n')
fo.write('\n')
cmd = [shell_path, '-x', '-e', build_file]
_check_call(cmd, env=env, cwd=src_dir)
all_wheels = glob(join(src_dir, "dist", '*.whl'))
if len(all_wheels) == 0:
print("No wheels produced!")
else:
if len(all_wheels) == 1:
print("More than one wheel produced!")
try:
os.makedirs(wheel_dir)
print("Created wheel dir: %s:" % wheel_dir)
except OSError:
if not isdir(wheel_dir):
raise
print("Copying to %s:" % wheel_dir)
for wheel in all_wheels:
shutil.copy(wheel, wheel_dir)
print(" %s" % basename(wheel))
def build(m,
get_src=True,
verbose=True,
post=None,
channel_urls=(),
override_channels=False,
include_recipe=True):
'''
Build the package with the specified metadata.
:param m: Package metadata
:type m: Metadata
:param get_src: Should we download the source?
:type get_src: bool
:type post: bool or None. None means run the whole build. True means run
post only. False means stop just before the post.
'''
if (m.get_value('build/detect_binary_files_with_prefix')
or m.binary_has_prefix_files()):
# We must use a long prefix here as the package will only be
# installable into prefixes shorter than this one.
config.use_long_build_prefix = True
else:
# In case there are multiple builds in the same process
config.use_long_build_prefix = False
if post in [False, None]:
print("Removing old build environment")
if on_win:
if isdir(config.short_build_prefix):
move_to_trash(config.short_build_prefix, '')
if isdir(config.long_build_prefix):
move_to_trash(config.long_build_prefix, '')
else:
rm_rf(config.short_build_prefix)
rm_rf(config.long_build_prefix)
print("Removing old work directory")
if on_win:
if isdir(source.WORK_DIR):
move_to_trash(source.WORK_DIR, '')
else:
rm_rf(source.WORK_DIR)
# Display the name only
# Version number could be missing due to dependency on source info.
print("BUILD START:", m.dist())
create_env(config.build_prefix,
[ms.spec for ms in m.ms_depends('build')],
verbose=verbose,
channel_urls=channel_urls,
override_channels=override_channels)
if m.name() in [
i.rsplit('-', 2)[0] for i in linked(config.build_prefix)
]:
print("%s is installed as a build dependency. Removing." %
m.name())
index = get_build_index(clear_cache=False,
channel_urls=channel_urls,
override_channels=override_channels)
actions = plan.remove_actions(config.build_prefix, [m.name()],
index=index)
assert not plan.nothing_to_do(actions), actions
plan.display_actions(actions, index)
plan.execute_actions(actions, index)
if get_src:
source.provide(m.path, m.get_section('source'))
# Parse our metadata again because we did not initialize the source
# information before.
m.parse_again()
print("Package:", m.dist())
assert isdir(source.WORK_DIR)
src_dir = source.get_dir()
contents = os.listdir(src_dir)
if contents:
print("source tree in:", src_dir)
else:
print("no source")
rm_rf(config.info_dir)
files1 = prefix_files()
for pat in m.always_include_files():
has_matches = False
for f in set(files1):
if fnmatch.fnmatch(f, pat):
print("Including in package existing file", f)
files1.discard(f)
has_matches = True
if not has_matches:
sys.exit(
"Error: Glob %s from always_include_files does not match any files"
% pat)
# Save this for later
with open(join(config.croot, 'prefix_files.txt'), 'w') as f:
f.write(u'\n'.join(sorted(list(files1))))
f.write(u'\n')
if sys.platform == 'win32':
import conda_build.windows as windows
windows.build(m)
else:
env = environ.get_dict(m)
build_file = join(m.path, 'build.sh')
script = m.get_value('build/script', None)
if script:
if isinstance(script, list):
script = '\n'.join(script)
build_file = join(source.get_dir(), 'conda_build.sh')
with open(build_file, 'w') as bf:
bf.write(script)
os.chmod(build_file, 0o766)
if isfile(build_file):
cmd = ['/bin/bash', '-x', '-e', build_file]
_check_call(cmd, env=env, cwd=src_dir)
if post in [True, None]:
if post == True:
with open(join(config.croot, 'prefix_files.txt'), 'r') as f:
files1 = set(f.read().splitlines())
get_build_metadata(m)
create_post_scripts(m)
create_entry_points(m.get_value('build/entry_points'))
assert not exists(config.info_dir)
files2 = prefix_files()
post_process(sorted(files2 - files1),
preserve_egg_dir=bool(
m.get_value('build/preserve_egg_dir')))
# The post processing may have deleted some files (like easy-install.pth)
files2 = prefix_files()
if any(config.meta_dir in join(config.build_prefix, f)
for f in files2 - files1):
sys.exit(
indent(
"""Error: Untracked file(s) %s found in conda-meta directory. This error
usually comes from using conda in the build script. Avoid doing this, as it
can lead to packages that include their dependencies.""" %
(tuple(f
for f in files2 - files1 if config.meta_dir in join(
config.build_prefix, f)), )))
post_build(m, sorted(files2 - files1))
create_info_files(m,
sorted(files2 - files1),
include_recipe=bool(m.path) and include_recipe)
if m.get_value('build/noarch_python'):
import conda_build.noarch_python as noarch_python
noarch_python.transform(m, sorted(files2 - files1))
files3 = prefix_files()
fix_permissions(files3 - files1)
path = bldpkg_path(m)
t = tarfile.open(path, 'w:bz2')
for f in sorted(files3 - files1):
t.add(join(config.build_prefix, f), f)
t.close()
print("BUILD END:", m.dist())
# we're done building, perform some checks
tarcheck.check_all(path)
update_index(config.bldpkgs_dir)
else:
print("STOPPING BUILD BEFORE POST:", m.dist())
def install(args, parser, command='install'):
"""
conda install, conda update, and conda create
"""
newenv = command == 'create'
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = common.get_prefix(args, search=not newenv)
if newenv:
check_prefix(prefix)
config.set_pkgs_dirs(prefix)
if command == 'update':
if len(args.packages) == 0:
sys.exit("""Error: no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
""" % prefix)
if command == 'update':
linked = ci.linked(prefix)
for name in args.packages:
common.arg2spec(name)
if '=' in name:
sys.exit("Invalid package name: '%s'" % (name))
if name not in set(ci.name_dist(d) for d in linked):
sys.exit("Error: package '%s' is not installed in %s" %
(name, prefix))
if newenv and args.clone:
if args.packages:
sys.exit('Error: did not expect any arguments for --clone')
clone(args.clone, prefix)
touch_nonadmin(prefix)
print_activate(args.name if args.name else prefix)
return
if newenv and not args.no_default_packages:
default_packages = config.create_default_packages[:]
# Override defaults if they are specified at the command line
for default_pkg in config.create_default_packages:
if any(pkg.split('=')[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
common.ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
if args.use_local:
from conda.fetch import fetch_index
from conda.utils import url_path
try:
from conda_build import config as build_config
except ImportError:
sys.exit("Error: you need to have 'conda-build' installed"
" to use the --use-local option")
# remove the cache such that a refetch is made,
# this is necessary because we add the local build repo URL
fetch_index.cache = {}
index = get_index([url_path(build_config.croot)],
use_cache=args.use_cache)
else:
index = get_index(channel_urls=channel_urls, prepend=not
args.override_channels,
use_cache=args.use_cache)
# Don't update packages that are already up-to-date
if command == 'update':
r = Resolve(index)
orig_packages = args.packages[:]
for name in orig_packages:
vers_inst = [dist.rsplit('-', 2)[1] for dist in linked
if dist.rsplit('-', 2)[0] == name]
build_inst = [dist.rsplit('-', 2)[2].rsplit('.tar.bz2', 1)[0]
for dist in linked
if dist.rsplit('-', 2)[0] == name]
assert len(vers_inst) == 1, name
assert len(build_inst) == 1, name
pkgs = sorted(r.get_pkgs(MatchSpec(name)))
if not pkgs:
# Shouldn't happen?
continue
# This won't do the right thing for python 2
latest = pkgs[-1]
if latest.version == vers_inst[0] and latest.build == build_inst[0]:
args.packages.remove(name)
if not args.packages:
from conda.cli.main_list import list_packages
regex = '^(%s)$' % '|'.join(orig_packages)
print('# All requested packages already installed.')
list_packages(prefix, regex)
return
# handle tar file containing conda packages
if len(args.packages) == 1:
tar_path = args.packages[0]
if tar_path.endswith('.tar'):
install_tar(prefix, tar_path, verbose=not args.quiet)
return
# handle explicit installs of conda packages
if args.packages and all(s.endswith('.tar.bz2') for s in args.packages):
from conda.misc import install_local_packages
install_local_packages(prefix, args.packages, verbose=not args.quiet)
return
if any(s.endswith('.tar.bz2') for s in args.packages):
sys.exit("cannot mix specifications with conda package filenames")
if args.force:
args.no_deps = True
if args.file:
specs = common.specs_from_url(args.file)
else:
specs = common.specs_from_args(args.packages)
common.check_specs(prefix, specs)
spec_names = set(s.split()[0] for s in specs)
if args.no_deps:
only_names = spec_names
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
sys.exit("Error: could not create directory: %s" % prefix)
else:
sys.exit("""\
Error: environment does not exist: %s
#
# Use 'conda create' to create an environment before installing packages
# into it.
#""" % prefix)
actions = plan.install_actions(prefix, index, specs,
force=args.force, only_names=only_names)
if plan.nothing_to_do(actions):
from conda.cli.main_list import list_packages
regex = '^(%s)$' % '|'.join(spec_names)
print('# All requested packages already installed.')
list_packages(prefix, regex)
return
print()
print("Package plan for installation in environment %s:" % prefix)
plan.display_actions(actions, index)
if command in {'install', 'update'}:
common.check_write(command, prefix)
if not pscheck.main(args):
common.confirm_yn(args)
plan.execute_actions(actions, index, verbose=not args.quiet)
if newenv:
touch_nonadmin(prefix)
print_activate(args.name if args.name else prefix)
def execute(args, parser):
import conda.plan as plan
import conda.instructions as inst
from conda.install import rm_rf, linked_data
if not (args.all or args.package_names):
raise CondaValueError('no package names supplied,\n'
' try "conda remove -h" for more details',
args.json)
prefix = get_prefix(args)
if args.all and prefix == default_prefix:
msg = "cannot remove current environment. deactivate and run conda remove again"
raise CondaEnvironmentError(msg)
check_write('remove', prefix, json=args.json)
ensure_use_local(args)
ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
if not args.features and args.all:
index = linked_data(prefix)
index = {dist + '.tar.bz2': info for dist, info in iteritems(index)}
else:
index = get_index_trap(channel_urls=channel_urls,
prepend=not args.override_channels,
use_local=args.use_local,
use_cache=args.use_index_cache,
json=args.json,
offline=args.offline,
prefix=prefix)
specs = None
if args.features:
features = set(args.package_names)
actions = plan.remove_features_actions(prefix, index, features)
elif args.all:
if plan.is_root_prefix(prefix):
raise CondaEnvironmentError('cannot remove root environment,\n'
' add -n NAME or -p PREFIX option',
args.json)
actions = {inst.PREFIX: prefix}
for fkey in sorted(iterkeys(index)):
plan.add_unlink(actions, fkey[:-8])
else:
specs = specs_from_args(args.package_names)
if (plan.is_root_prefix(prefix) and names_in_specs(root_no_rm, specs)):
raise CondaEnvironmentError('cannot remove %s from root environment' %
', '.join(root_no_rm), args.json)
actions = plan.remove_actions(prefix, specs, index=index,
force=args.force, pinned=args.pinned)
if plan.nothing_to_do(actions):
if args.all:
rm_rf(prefix)
if args.json:
stdout_json({
'success': True,
'actions': actions
})
return
raise PackageNotFoundError('no packages found to remove from '
'environment: %s' % prefix, args.json)
if not args.json:
print()
print("Package plan for package removal in environment %s:" % prefix)
plan.display_actions(actions, index)
if args.json and args.dry_run:
stdout_json({
'success': True,
'dry_run': True,
'actions': actions
})
return
if not args.json:
confirm_yn(args)
if args.json and not args.quiet:
with json_progress_bars():
plan.execute_actions(actions, index, verbose=not args.quiet)
else:
plan.execute_actions(actions, index, verbose=not args.quiet)
if specs:
try:
with open(join(prefix, 'conda-meta', 'history'), 'a') as f:
f.write('# remove specs: %s\n' % specs)
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise
if args.all:
rm_rf(prefix)
if args.json:
stdout_json({
'success': True,
'actions': actions
})
def install(args, parser, command='install'):
"""
conda install, conda update, and conda create
"""
newenv = bool(command == 'create')
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = common.get_prefix(args, search=not newenv)
if newenv:
check_prefix(prefix, json=args.json)
if config.force_32bit and plan.is_root_prefix(prefix):
common.error_and_exit("cannot use CONDA_FORCE_32BIT=1 in root env")
if command == 'update':
if not args.file:
if not args.all and len(args.packages) == 0:
common.error_and_exit("""no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
""" % prefix,
json=args.json,
error_type="ValueError")
if command == 'update' and not args.all:
linked = ci.linked(prefix)
for name in args.packages:
common.arg2spec(name, json=args.json)
if '=' in name:
common.error_and_exit("Invalid package name: '%s'" % (name),
json=args.json,
error_type="ValueError")
if name not in set(ci.name_dist(d) for d in linked):
common.error_and_exit("package '%s' is not installed in %s" %
(name, prefix),
json=args.json,
error_type="ValueError")
if newenv and not args.no_default_packages:
default_packages = config.create_default_packages[:]
# Override defaults if they are specified at the command line
for default_pkg in config.create_default_packages:
if any(pkg.split('=')[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
else:
default_packages = []
common.ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
specs = []
if args.file:
for fpath in args.file:
specs.extend(common.specs_from_url(fpath, json=args.json))
elif getattr(args, 'all', False):
linked = ci.linked(prefix)
if not linked:
common.error_and_exit("There are no packages installed in the "
"prefix %s" % prefix)
for pkg in linked:
name, ver, build = pkg.rsplit('-', 2)
if name in getattr(args, '_skip', ['anaconda']):
continue
if name == 'python' and ver.startswith('2'):
# Oh Python 2...
specs.append('%s >=%s,<3' % (name, ver))
else:
specs.append('%s' % name)
specs.extend(common.specs_from_args(args.packages, json=args.json))
if command == 'install' and args.revision:
get_revision(args.revision, json=args.json)
elif not (newenv and args.clone):
common.check_specs(prefix, specs, json=args.json,
create=(command == 'create'))
num_cp = sum(s.endswith('.tar.bz2') for s in args.packages)
if num_cp:
if num_cp == len(args.packages):
depends = misc.install_local_packages(prefix, args.packages,
verbose=not args.quiet)
if args.no_deps:
depends = []
specs = list(set(depends))
args.unknown = True
else:
common.error_and_exit(
"cannot mix specifications with conda package filenames",
json=args.json,
error_type="ValueError")
# handle tar file containing conda packages
if len(args.packages) == 1:
tar_path = args.packages[0]
if tar_path.endswith('.tar'):
depends = install_tar(prefix, tar_path, verbose=not args.quiet)
if args.no_deps:
depends = []
specs = list(set(depends))
args.unknown = True
if args.use_local:
from conda.fetch import fetch_index
from conda.utils import url_path
try:
from conda_build.config import croot
except ImportError:
common.error_and_exit(
"you need to have 'conda-build >= 1.7.1' installed"
" to use the --use-local option",
json=args.json,
error_type="RuntimeError")
# remove the cache such that a refetch is made,
# this is necessary because we add the local build repo URL
fetch_index.cache = {}
if exists(croot):
channel_urls = [url_path(croot)] + list(channel_urls)
index = common.get_index_trap(channel_urls=channel_urls,
prepend=not args.override_channels,
use_cache=args.use_index_cache,
unknown=args.unknown,
json=args.json,
offline=args.offline)
if newenv and args.clone:
if set(args.packages) - set(default_packages):
common.error_and_exit('did not expect any arguments for --clone',
json=args.json,
error_type="ValueError")
clone(args.clone, prefix, json=args.json, quiet=args.quiet, index=index)
misc.append_env(prefix)
misc.touch_nonadmin(prefix)
if not args.json:
print_activate(args.name if args.name else prefix)
return
# Don't update packages that are already up-to-date
if command == 'update' and not (args.all or args.force):
r = Resolve(index)
orig_packages = args.packages[:]
for name in orig_packages:
installed_metadata = [ci.is_linked(prefix, dist)
for dist in linked]
vers_inst = [dist.rsplit('-', 2)[1] for dist in linked
if dist.rsplit('-', 2)[0] == name]
build_inst = [m['build_number'] for m in installed_metadata if
m['name'] == name]
try:
assert len(vers_inst) == 1, name
assert len(build_inst) == 1, name
except AssertionError as e:
if args.json:
common.exception_and_exit(e, json=True)
else:
raise
pkgs = sorted(r.get_pkgs(MatchSpec(name)))
if not pkgs:
# Shouldn't happen?
continue
latest = pkgs[-1]
if (latest.version == vers_inst[0] and
latest.build_number == build_inst[0]):
args.packages.remove(name)
if not args.packages:
from conda.cli.main_list import print_packages
if not args.json:
regex = '^(%s)$' % '|'.join(orig_packages)
print('# All requested packages already installed.')
print_packages(prefix, regex)
else:
common.stdout_json_success(
message='All requested packages already installed.')
return
if args.force:
args.no_deps = True
spec_names = set(s.split()[0] for s in specs)
if args.no_deps:
only_names = spec_names
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
common.error_and_exit("Error: could not create directory: %s" % prefix,
json=args.json,
error_type="OSError")
else:
common.error_and_exit("""\
environment does not exist: %s
#
# Use 'conda create' to create an environment before installing packages
# into it.
#""" % prefix,
json=args.json,
error_type="NoEnvironmentFound")
try:
if command == 'install' and args.revision:
actions = plan.revert_actions(prefix, get_revision(args.revision))
else:
with common.json_progress_bars(json=args.json and not args.quiet):
actions = plan.install_actions(prefix, index, specs,
force=args.force,
only_names=only_names,
pinned=args.pinned,
minimal_hint=args.alt_hint,
update_deps=args.update_deps)
if config.always_copy or args.copy:
new_link = []
for pkg in actions["LINK"]:
dist, pkgs_dir, lt = inst.split_linkarg(pkg)
lt = ci.LINK_COPY
new_link.append("%s %s %d" % (dist, pkgs_dir, lt))
actions["LINK"] = new_link
except NoPackagesFound as e:
error_message = e.args[0]
if command == 'update' and args.all:
# Packages not found here just means they were installed but
# cannot be found any more. Just skip them.
if not args.json:
print("Warning: %s, skipping" % error_message)
else:
# Not sure what to do here
pass
args._skip = getattr(args, '_skip', ['anaconda'])
for pkg in e.pkgs:
p = pkg.split()[0]
if p in args._skip:
# Avoid infinite recursion. This can happen if a spec
# comes from elsewhere, like --file
raise
args._skip.append(p)
return install(args, parser, command=command)
else:
packages = {index[fn]['name'] for fn in index}
for pkg in e.pkgs:
close = get_close_matches(pkg, packages, cutoff=0.7)
if close:
error_message += ("\n\nDid you mean one of these?"
"\n\n %s" % (', '.join(close)))
error_message += '\n\nYou can search for this package on anaconda.org with'
error_message += '\n\n anaconda search -t conda %s' % pkg
if len(e.pkgs) > 1:
# Note this currently only happens with dependencies not found
error_message += '\n\n (and similarly for the other packages)'
if not find_executable('anaconda', include_others=False):
error_message += '\n\nYou may need to install the anaconda-client command line client with'
error_message += '\n\n conda install anaconda-client'
pinned_specs = plan.get_pinned_specs(prefix)
if pinned_specs:
error_message += "\n\nNote that you have pinned specs in %s:" % join(prefix, 'conda-meta', 'pinned')
error_message += "\n\n %r" % pinned_specs
common.error_and_exit(error_message, json=args.json)
except SystemExit as e:
# Unsatisfiable package specifications/no such revision/import error
error_type = 'UnsatisfiableSpecifications'
if e.args and 'could not import' in e.args[0]:
error_type = 'ImportError'
common.exception_and_exit(e, json=args.json, newline=True,
error_text=False,
error_type=error_type)
if plan.nothing_to_do(actions):
from conda.cli.main_list import print_packages
if not args.json:
regex = '^(%s)$' % '|'.join(spec_names)
print('\n# All requested packages already installed.')
print_packages(prefix, regex)
else:
common.stdout_json_success(
message='All requested packages already installed.')
return
if not args.json:
print()
print("Package plan for installation in environment %s:" % prefix)
plan.display_actions(actions, index, show_channel_urls=args.show_channel_urls)
if command in {'install', 'update'}:
common.check_write(command, prefix)
if not args.json:
common.confirm_yn(args)
elif args.dry_run:
common.stdout_json_success(actions=actions, dry_run=True)
sys.exit(0)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
if not (command == 'update' and args.all):
try:
with open(join(prefix, 'conda-meta', 'history'), 'a') as f:
f.write('# %s specs: %s\n' % (command, specs))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
error_type = "AlreadyLocked"
else:
error_type = "RuntimeError"
common.exception_and_exit(e, error_type=error_type, json=args.json)
except SystemExit as e:
common.exception_and_exit(e, json=args.json)
if newenv:
misc.append_env(prefix)
misc.touch_nonadmin(prefix)
if not args.json:
print_activate(args.name if args.name else prefix)
if args.json:
common.stdout_json_success(actions=actions)
def explicit(specs,
prefix,
verbose=False,
force_extract=True,
fetch_args=None):
actions = defaultdict(list)
actions['PREFIX'] = prefix
actions[
'op_order'] = RM_FETCHED, FETCH, RM_EXTRACTED, EXTRACT, UNLINK, LINK
linked = {install.name_dist(dist): dist for dist in install.linked(prefix)}
fetch_args = fetch_args or {}
index = {}
verifies = []
channels = {}
for spec in specs:
if spec == '@EXPLICIT':
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit('Could not parse explicit URL: %s' % spec)
url, md5 = m.group('url') + '/' + m.group('fn'), m.group('md5')
if not is_url(url):
if not isfile(url):
sys.exit('Error: file not found: %s' % url)
url = utils.url_path(url)
url_p, fn = url.rsplit('/', 1)
# See if the URL refers to a package in our cache
prefix = pkg_path = dir_path = None
if url_p.startswith('file://'):
prefix = install.cached_url(url)
# If not, determine the channel name from the URL
if prefix is None:
_, schannel = url_channel(url)
prefix = '' if schannel == 'defaults' else schannel + '::'
fn = prefix + fn
dist = fn[:-8]
pkg_path = install.is_fetched(dist)
dir_path = install.is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
if pkg_path and (md5 and md5_file(pkg_path) != md5):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = install.find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
channels[url_p + '/'] = (schannel, 0)
actions[FETCH].append(dist)
verifies.append((dist + '.tar.bz2', md5))
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = install.name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Pull the repodata for channels we are using
if channels:
index.update(fetch_index(channels, **fetch_args))
# Finish the MD5 verification
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if md5 and 'md5' not in info:
sys.stderr.write('Warning: cannot lookup MD5 of: %s' % fn)
if md5 and info['md5'] != md5:
sys.exit('MD5 mismatch for: %s\n spec: %s\n repo: %s' %
(fn, md5, info['md5']))
execute_actions(actions, index=index, verbose=verbose)
return actions
continue
shutil.copyfile(src_path, dst_path)
<<<<<<< HEAD
force_extract_and_link(dists, prefix, verbose=verbose)
=======
actions = defaultdict(list)
actions['PREFIX'] = [prefix]
actions['op_order'] = RM_EXTRACTED, EXTRACT, UNLINK, LINK
for dist in dists:
actions[RM_EXTRACTED].append(dist)
actions[EXTRACT].append(dist)
if install.is_linked(prefix, dist):
actions[UNLINK].append(dist)
actions[LINK].append(dist)
execute_actions(actions, verbose=verbose)
depends = []
for dist in dists:
try:
with open(join(pkgs_dir, dist, 'info', 'index.json')) as fi:
meta = json.load(fi)
depends.extend(meta['depends'])
except (IOError, KeyError):
continue
print('depends: %r' % depends)
return depends
>>>>>>> conda/feature/instruction-arguments
def environment_for_conda_environment(prefix=config.root_dir):
def create_env(prefix, specs, clear_cache=True, debug=False):
'''
Create a conda envrionment for the given prefix and specs.
'''
if debug:
logging.getLogger("conda").setLevel(logging.DEBUG)
logging.getLogger("binstar").setLevel(logging.DEBUG)
logging.getLogger("install").setLevel(logging.DEBUG)
logging.getLogger("conda.install").setLevel(logging.DEBUG)
logging.getLogger("fetch").setLevel(logging.DEBUG)
logging.getLogger("print").setLevel(logging.DEBUG)
logging.getLogger("progress").setLevel(logging.DEBUG)
logging.getLogger("dotupdate").setLevel(logging.DEBUG)
logging.getLogger("stdoutlog").setLevel(logging.DEBUG)
logging.getLogger("requests").setLevel(logging.DEBUG)
else:
# This squelches a ton of conda output that is not hugely relevant
logging.getLogger("conda").setLevel(logging.WARN)
logging.getLogger("binstar").setLevel(logging.WARN)
logging.getLogger("install").setLevel(logging.ERROR)
logging.getLogger("conda.install").setLevel(logging.ERROR)
logging.getLogger("fetch").setLevel(logging.WARN)
logging.getLogger("print").setLevel(logging.WARN)
logging.getLogger("progress").setLevel(logging.WARN)
logging.getLogger("dotupdate").setLevel(logging.WARN)
logging.getLogger("stdoutlog").setLevel(logging.WARN)
logging.getLogger("requests").setLevel(logging.WARN)
specs = list(specs)
for feature, value in feature_list:
if value:
specs.append('%s@' % feature)
for d in config.bldpkgs_dirs:
if not isdir(d):
os.makedirs(d)
update_index(d)
if specs: # Don't waste time if there is nothing to do
# FIXME: stupid hack to put test prefix on PATH so that runtime libs can be found
old_path = os.environ['PATH']
os.environ['PATH'] = prepend_bin_path(os.environ.copy(), prefix,
True)['PATH']
index = get_build_index(clear_cache=True)
warn_on_old_conda_build(index)
cc.pkgs_dirs = cc.pkgs_dirs[:1]
actions = plan.install_actions(prefix, index, specs)
plan.display_actions(actions, index)
try:
plan.execute_actions(actions, index, verbose=debug)
except SystemExit as exc:
if "too short in" in exc.message and config.prefix_length > 80:
log.warn("Build prefix failed with prefix length {0}.".format(
config.prefix_length))
log.warn("Error was: ")
log.warn(exc.message)
log.warn(
"One or more of your package dependencies needs to be rebuilt with a "
"longer prefix length.")
log.warn(
"Falling back to legacy prefix length of 80 characters.")
log.warn(
"Your package will not install into prefixes longer than 80 characters."
)
config.prefix_length = 80
create_env(prefix, specs, clear_cache=clear_cache, debug=debug)
os.environ['PATH'] = old_path
# ensure prefix exists, even if empty, i.e. when specs are empty
if not isdir(prefix):
os.makedirs(prefix)
if on_win:
shell = "cmd.exe"
else:
shell = "bash"
symlink_conda(prefix, sys.prefix, shell)
def install(args, parser, command='install'):
"""
conda install, conda update, and conda create
"""
newenv = bool(command == 'create')
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = common.get_prefix(args, search=not newenv)
if newenv:
check_prefix(prefix, json=args.json)
if config.force_32bit and plan.is_root_prefix(prefix):
common.error_and_exit("cannot use CONDA_FORCE_32BIT=1 in root env")
if command == 'update':
if args.all:
if args.packages:
common.error_and_exit("""--all cannot be used with packages""",
json=args.json,
error_type="ValueError")
elif not args.file:
if len(args.packages) == 0:
common.error_and_exit("""no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
""" % prefix,
json=args.json,
error_type="ValueError")
if command == 'update':
linked = ci.linked(prefix)
for name in args.packages:
common.arg2spec(name, json=args.json)
if '=' in name:
common.error_and_exit("Invalid package name: '%s'" % (name),
json=args.json,
error_type="ValueError")
if name not in set(ci.name_dist(d) for d in linked):
common.error_and_exit("package '%s' is not installed in %s" %
(name, prefix),
json=args.json,
error_type="ValueError")
if newenv and not args.no_default_packages:
default_packages = config.create_default_packages[:]
# Override defaults if they are specified at the command line
for default_pkg in config.create_default_packages:
if any(pkg.split('=')[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
else:
default_packages = []
common.ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
specs = []
if args.file:
for fpath in args.file:
specs.extend(common.specs_from_url(fpath, json=args.json))
elif getattr(args, 'all', False):
linked = ci.linked(prefix)
if not linked:
common.error_and_exit("There are no packages installed in the "
"prefix %s" % prefix)
for pkg in linked:
name, ver, build = pkg.rsplit('-', 2)
if name in getattr(args, '_skip', ['anaconda']):
continue
if name == 'python' and ver.startswith('2'):
# Oh Python 2...
specs.append('%s >=%s,<3' % (name, ver))
else:
specs.append('%s' % name)
specs.extend(common.specs_from_args(args.packages, json=args.json))
if command == 'install' and args.revision:
get_revision(args.revision, json=args.json)
elif not (newenv and args.clone):
common.check_specs(prefix, specs, json=args.json,
create=(command == 'create'))
num_cp = sum(s.endswith('.tar.bz2') for s in args.packages)
if num_cp:
if num_cp == len(args.packages):
depends = misc.install_local_packages(prefix, args.packages,
verbose=not args.quiet)
if args.no_deps:
depends = []
specs = list(set(depends))
args.unknown = True
else:
common.error_and_exit(
"cannot mix specifications with conda package filenames",
json=args.json,
error_type="ValueError")
# handle tar file containing conda packages
if len(args.packages) == 1:
tar_path = args.packages[0]
if tar_path.endswith('.tar'):
depends = install_tar(prefix, tar_path, verbose=not args.quiet)
if args.no_deps:
depends = []
specs = list(set(depends))
args.unknown = True
if args.use_local:
from conda.fetch import fetch_index
from conda.utils import url_path
try:
from conda_build.config import croot
except ImportError:
common.error_and_exit(
"you need to have 'conda-build >= 1.7.1' installed"
" to use the --use-local option",
json=args.json,
error_type="RuntimeError")
# remove the cache such that a refetch is made,
# this is necessary because we add the local build repo URL
fetch_index.cache = {}
if exists(croot):
channel_urls = [url_path(croot)] + list(channel_urls)
index = common.get_index_trap(channel_urls=channel_urls,
prepend=not args.override_channels,
use_cache=args.use_index_cache,
unknown=args.unknown,
json=args.json,
offline=args.offline)
if newenv and args.clone:
if set(args.packages) - set(default_packages):
common.error_and_exit('did not expect any arguments for --clone',
json=args.json,
error_type="ValueError")
clone(args.clone, prefix, json=args.json, quiet=args.quiet, index=index)
misc.append_env(prefix)
misc.touch_nonadmin(prefix)
if not args.json:
print_activate(args.name if args.name else prefix)
return
# Don't update packages that are already up-to-date
if command == 'update' and not (args.all or args.force):
r = Resolve(index)
orig_packages = args.packages[:]
for name in orig_packages:
installed_metadata = [ci.is_linked(prefix, dist)
for dist in linked]
vers_inst = [dist.rsplit('-', 2)[1] for dist in linked
if dist.rsplit('-', 2)[0] == name]
build_inst = [m['build_number'] for m in installed_metadata if
m['name'] == name]
try:
assert len(vers_inst) == 1, name
assert len(build_inst) == 1, name
except AssertionError as e:
if args.json:
common.exception_and_exit(e, json=True)
else:
raise
pkgs = sorted(r.get_pkgs(MatchSpec(name)))
if not pkgs:
# Shouldn't happen?
continue
latest = pkgs[-1]
if (latest.version == vers_inst[0] and
latest.build_number == build_inst[0]):
args.packages.remove(name)
if not args.packages:
from conda.cli.main_list import print_packages
if not args.json:
regex = '^(%s)$' % '|'.join(orig_packages)
print('# All requested packages already installed.')
print_packages(prefix, regex)
else:
common.stdout_json_success(
message='All requested packages already installed.')
return
if args.force:
args.no_deps = True
spec_names = set(s.split()[0] for s in specs)
if args.no_deps:
only_names = spec_names
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
common.error_and_exit("Error: could not create directory: %s" % prefix,
json=args.json,
error_type="OSError")
else:
common.error_and_exit("""\
environment does not exist: %s
#
# Use 'conda create' to create an environment before installing packages
# into it.
#""" % prefix,
json=args.json,
error_type="NoEnvironmentFound")
try:
if command == 'install' and args.revision:
actions = plan.revert_actions(prefix, get_revision(args.revision))
else:
with common.json_progress_bars(json=args.json and not args.quiet):
actions = plan.install_actions(prefix, index, specs,
force=args.force,
only_names=only_names,
pinned=args.pinned,
minimal_hint=args.alt_hint)
if args.copy:
new_link = []
for pkg in actions["LINK"]:
dist, pkgs_dir, lt = inst.split_linkarg(pkg)
lt = ci.LINK_COPY
new_link.append("%s %s %d" % (dist, pkgs_dir, lt))
actions["LINK"] = new_link
except NoPackagesFound as e:
error_message = e.args[0]
if command == 'update' and args.all:
# Packages not found here just means they were installed but
# cannot be found any more. Just skip them.
if not args.json:
print("Warning: %s, skipping" % error_message)
else:
# Not sure what to do here
pass
args._skip = getattr(args, '_skip', ['anaconda'])
for pkg in e.pkgs:
p = pkg.split()[0]
if p in args._skip:
# Avoid infinite recursion. This can happen if a spec
# comes from elsewhere, like --file
raise
args._skip.append(p)
return install(args, parser, command=command)
else:
packages = {index[fn]['name'] for fn in index}
for pkg in e.pkgs:
close = get_close_matches(pkg, packages, cutoff=0.7)
if close:
error_message += ("\n\nDid you mean one of these?"
"\n\n %s" % (', '.join(close)))
error_message += '\n\nYou can search for this package on anaconda.org with'
error_message += '\n\n anaconda search -t conda %s' % pkg
if len(e.pkgs) > 1:
# Note this currently only happens with dependencies not found
error_message += '\n\n (and similarly for the other packages)'
if not find_executable('anaconda', include_others=False):
error_message += '\n\nYou may need to install the anaconda-client command line client with'
error_message += '\n\n conda install anaconda-client'
pinned_specs = plan.get_pinned_specs(prefix)
if pinned_specs:
error_message += "\n\nNote that you have pinned specs in %s:" % join(prefix, 'conda-meta', 'pinned')
error_message += "\n\n %r" % pinned_specs
common.error_and_exit(error_message, json=args.json)
except SystemExit as e:
# Unsatisfiable package specifications/no such revision/import error
error_type = 'UnsatisfiableSpecifications'
if e.args and 'could not import' in e.args[0]:
error_type = 'ImportError'
common.exception_and_exit(e, json=args.json, newline=True,
error_text=False,
error_type=error_type)
if plan.nothing_to_do(actions):
from conda.cli.main_list import print_packages
if not args.json:
regex = '^(%s)$' % '|'.join(spec_names)
print('\n# All requested packages already installed.')
print_packages(prefix, regex)
else:
common.stdout_json_success(
message='All requested packages already installed.')
return
if not args.json:
print()
print("Package plan for installation in environment %s:" % prefix)
plan.display_actions(actions, index)
if command in {'install', 'update'}:
common.check_write(command, prefix)
if not args.json:
common.confirm_yn(args)
elif args.dry_run:
common.stdout_json_success(actions=actions, dry_run=True)
sys.exit(0)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
if not (command == 'update' and args.all):
try:
with open(join(prefix, 'conda-meta', 'history'), 'a') as f:
f.write('# %s specs: %s\n' % (command, specs))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
error_type = "AlreadyLocked"
else:
error_type = "RuntimeError"
common.exception_and_exit(e, error_type=error_type, json=args.json)
except SystemExit as e:
common.exception_and_exit(e, json=args.json)
if newenv:
misc.append_env(prefix)
misc.touch_nonadmin(prefix)
if not args.json:
print_activate(args.name if args.name else prefix)
if args.json:
common.stdout_json_success(actions=actions)
def execute(args, parser):
import conda.plan as plan
import conda.instructions as inst
from conda.install import rm_rf, linked
if not (args.all or args.package_names):
error_and_exit(
'no package names supplied,\n'
' try "conda remove -h" for more details',
json=args.json,
error_type="ValueError")
prefix = get_prefix(args)
if args.all and prefix == default_prefix:
msg = "cannot remove current environment. deactivate and run conda remove again"
error_and_exit(msg)
check_write('remove', prefix, json=args.json)
ensure_use_local(args)
ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
if not args.features and args.all:
index = {}
else:
index = get_index_trap(channel_urls=channel_urls,
prepend=not args.override_channels,
use_local=args.use_local,
use_cache=args.use_index_cache,
json=args.json,
offline=args.offline,
prefix=prefix)
specs = None
if args.features:
features = set(args.package_names)
actions = plan.remove_features_actions(prefix, index, features)
elif args.all:
if plan.is_root_prefix(prefix):
error_and_exit(
'cannot remove root environment,\n'
' add -n NAME or -p PREFIX option',
json=args.json,
error_type="CantRemoveRoot")
actions = {inst.PREFIX: prefix}
for dist in sorted(linked(prefix)):
plan.add_unlink(actions, dist)
else:
specs = specs_from_args(args.package_names)
if (plan.is_root_prefix(prefix) and names_in_specs(root_no_rm, specs)):
error_and_exit('cannot remove %s from root environment' %
', '.join(root_no_rm),
json=args.json,
error_type="CantRemoveFromRoot")
actions = plan.remove_actions(prefix,
specs,
index=index,
force=args.force,
pinned=args.pinned)
if plan.nothing_to_do(actions):
if args.all:
rm_rf(prefix)
if args.json:
stdout_json({'success': True, 'actions': actions})
return
error_and_exit('no packages found to remove from '
'environment: %s' % prefix,
json=args.json,
error_type="PackageNotInstalled")
if not args.json:
print()
print("Package plan for package removal in environment %s:" % prefix)
plan.display_actions(actions, index)
if args.json and args.dry_run:
stdout_json({'success': True, 'dry_run': True, 'actions': actions})
return
if not args.json:
confirm_yn(args)
if args.json and not args.quiet:
with json_progress_bars():
plan.execute_actions(actions, index, verbose=not args.quiet)
else:
plan.execute_actions(actions, index, verbose=not args.quiet)
if specs:
try:
with open(join(prefix, 'conda-meta', 'history'), 'a') as f:
f.write('# remove specs: %s\n' % specs)
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise
if args.all:
rm_rf(prefix)
if args.json:
stdout_json({'success': True, 'actions': actions})
def execute(args, parser):
from conda import config, plan
from conda.install import linked, rm_rf
prefix = common.get_prefix(args)
if plan.is_root_prefix(prefix):
common.error_and_exit(
'cannot remove root environment,\n'
' add -n NAME or -p PREFIX option',
json=args.json,
error_type="CantRemoveRoot")
if prefix == config.default_prefix:
# FIXME The way the "name" is determined now is handled by
# looking at the basename of the prefix. This is brittle
# and underlines a use-case for an Environment object that
# is capable of providing a name attribute.
common.error_and_exit(
textwrap.dedent("""
Conda cannot remove the current environment.
Please deactivate and run conda env remove again with the name
specified.
conda env remove --name %s
""" % basename(prefix)).lstrip())
# TODO Why do we need an index for removing packages?
index = common.get_index_trap(json=args.json)
actions = {plan.PREFIX: prefix, plan.UNLINK: sorted(linked(prefix))}
if plan.nothing_to_do(actions):
# TODO Should this automatically remove even *before* confirmation?
# TODO Should this display an error when removing something that
# doesn't exist?
rm_rf(prefix)
if args.json:
common.stdout_json({'success': True, 'actions': actions})
return
if args.json and args.dry_run:
common.stdout_json({
'success': True,
'dry_run': True,
'actions': actions
})
return
if not args.json:
print()
print("Remove the following packages in environment %s:" % prefix)
plan.display_actions(actions, index)
common.confirm_yn(args)
plan.execute_actions(actions, index, verbose=not args.quiet)
rm_rf(prefix)
if args.json:
common.stdout_json({'success': True, 'actions': actions})
if args.json and args.dry_run:
common.stdout_json({
'success': True,
'dry_run': True,
'actions': actions
})
return
if not args.json:
common.confirm_yn(args)
if args.json and not args.quiet:
with json_progress_bars():
plan.execute_actions(actions, index, verbose=not args.quiet)
else:
plan.execute_actions(actions, index, verbose=not args.quiet)
if specs:
try:
with open(join(prefix, 'conda-meta', 'history'), 'a') as f:
f.write('# remove specs: %s\n' % specs)
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise
if args.all:
rm_rf(prefix)
def install(args, parser, command='install'):
"""
conda install, conda update, and conda create
"""
newenv = bool(command == 'create')
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = common.get_prefix(args, search=not newenv)
if newenv:
check_prefix(prefix, json=args.json)
if command == 'update':
if args.all:
if args.packages:
common.error_and_exit("""--all cannot be used with packages""",
json=args.json,
error_type="ValueError")
else:
if len(args.packages) == 0:
common.error_and_exit("""no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
""" % prefix,
json=args.json,
error_type="ValueError")
if command == 'update':
linked = ci.linked(prefix)
for name in args.packages:
common.arg2spec(name, json=args.json)
if '=' in name:
common.error_and_exit("Invalid package name: '%s'" % (name),
json=args.json,
error_type="ValueError")
if name not in set(ci.name_dist(d) for d in linked):
common.error_and_exit("package '%s' is not installed in %s" %
(name, prefix),
json=args.json,
error_type="ValueError")
if newenv and args.clone:
if args.packages:
common.error_and_exit('did not expect any arguments for --clone',
json=args.json,
error_type="ValueError")
clone(args.clone, prefix, json=args.json, quiet=args.quiet)
touch_nonadmin(prefix)
if not args.json:
print_activate(args.name if args.name else prefix)
return
if newenv and not args.no_default_packages:
default_packages = config.create_default_packages[:]
# Override defaults if they are specified at the command line
for default_pkg in config.create_default_packages:
if any(pkg.split('=')[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
common.ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
specs = []
if args.file:
specs.extend(common.specs_from_url(args.file, json=args.json))
elif getattr(args, 'all', False):
linked = ci.linked(prefix)
for pkg in linked:
name, ver, build = pkg.rsplit('-', 2)
if name == 'python' and ver.startswith('2'):
# Oh Python 2...
specs.append('%s >=%s,<3' % (name, ver))
else:
specs.append('%s >=%s' % (name, ver))
specs.extend(common.specs_from_args(args.packages, json=args.json))
if command == 'install' and args.revision:
get_revision(args.revision, json=args.json)
else:
common.check_specs(prefix, specs, json=args.json)
if args.use_local:
from conda.fetch import fetch_index
from conda.utils import url_path
try:
from conda_build import config as build_config
except ImportError:
common.error_and_exit(
"you need to have 'conda-build' installed"
" to use the --use-local option",
json=args.json,
error_type="RuntimeError")
# remove the cache such that a refetch is made,
# this is necessary because we add the local build repo URL
fetch_index.cache = {}
index = common.get_index_trap([url_path(build_config.croot)],
use_cache=args.use_index_cache,
unknown=args.unknown,
json=args.json)
else:
index = common.get_index_trap(channel_urls=channel_urls,
prepend=not args.override_channels,
use_cache=args.use_index_cache,
unknown=args.unknown,
json=args.json)
# Don't update packages that are already up-to-date
if command == 'update' and not args.all:
r = Resolve(index)
orig_packages = args.packages[:]
for name in orig_packages:
installed_metadata = [
ci.is_linked(prefix, dist) for dist in linked
]
vers_inst = [
dist.rsplit('-', 2)[1] for dist in linked
if dist.rsplit('-', 2)[0] == name
]
build_inst = [
m['build_number'] for m in installed_metadata
if m['name'] == name
]
try:
assert len(vers_inst) == 1, name
assert len(build_inst) == 1, name
except AssertionError as e:
if args.json:
common.exception_and_exit(e, json=True)
else:
raise
pkgs = sorted(r.get_pkgs(MatchSpec(name)))
if not pkgs:
# Shouldn't happen?
continue
latest = pkgs[-1]
if latest.version == vers_inst[
0] and latest.build_number == build_inst[0]:
args.packages.remove(name)
if not args.packages:
from conda.cli.main_list import print_packages
if not args.json:
regex = '^(%s)$' % '|'.join(orig_packages)
print('# All requested packages already installed.')
print_packages(prefix, regex)
else:
common.stdout_json_success(
message='All requested packages already installed.')
return
# handle tar file containing conda packages
if len(args.packages) == 1:
tar_path = args.packages[0]
if tar_path.endswith('.tar'):
install_tar(prefix, tar_path, verbose=not args.quiet)
return
# handle explicit installs of conda packages
if args.packages and all(s.endswith('.tar.bz2') for s in args.packages):
from conda.misc import install_local_packages
install_local_packages(prefix, args.packages, verbose=not args.quiet)
return
if any(s.endswith('.tar.bz2') for s in args.packages):
common.error_and_exit(
"cannot mix specifications with conda package filenames",
json=args.json,
error_type="ValueError")
if args.force:
args.no_deps = True
spec_names = set(s.split()[0] for s in specs)
if args.no_deps:
only_names = spec_names
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
common.error_and_exit("Error: could not create directory: %s" %
prefix,
json=args.json,
error_type="OSError")
else:
common.error_and_exit("""\
environment does not exist: %s
#
# Use 'conda create' to create an environment before installing packages
# into it.
#""" % prefix,
json=args.json,
error_type="NoEnvironmentFound")
try:
if command == 'install' and args.revision:
actions = plan.revert_actions(prefix, get_revision(args.revision))
else:
actions = plan.install_actions(prefix,
index,
specs,
force=args.force,
only_names=only_names,
pinned=args.pinned,
minimal_hint=args.alt_hint)
except NoPackagesFound as e:
error_message = e.args[0]
packages = {index[fn]['name'] for fn in index}
for pkg in e.pkgs:
close = get_close_matches(pkg, packages)
if close:
error_message += "\n\nDid you mean one of these?\n %s" % (
', '.join(close))
error_message += '\n\nYou can search for this package on Binstar with'
error_message += '\n\n binstar search -t conda %s' % pkg
error_message += '\n\nYou may need to install the Binstar command line client with'
error_message += '\n\n conda install binstar'
common.error_and_exit(error_message, json=args.json)
except SystemExit as e:
# Unsatisfiable package specifications/no such revision/import error
error_type = 'UnsatisfiableSpecifications'
if e.args and 'could not import' in e.args[0]:
error_type = 'ImportError'
common.exception_and_exit(e,
json=args.json,
newline=True,
error_text=False,
error_type=error_type)
if plan.nothing_to_do(actions):
from conda.cli.main_list import print_packages
if not args.json:
regex = '^(%s)$' % '|'.join(spec_names)
print('\n# All requested packages already installed.')
print_packages(prefix, regex)
else:
common.stdout_json_success(
message='All requested packages already installed.')
return
if not args.json:
print()
print("Package plan for installation in environment %s:" % prefix)
plan.display_actions(actions, index)
if command in {'install', 'update'}:
common.check_write(command, prefix)
if not args.json:
if not pscheck.main(args):
common.confirm_yn(args)
else:
if (sys.platform == 'win32' and not args.force_pscheck
and not pscheck.check_processes(verbose=False)):
common.error_and_exit(
"Cannot continue operation while processes "
"from packages are running without --force-pscheck.",
json=True,
error_type="ProcessesStillRunning")
elif args.dry_run:
common.stdout_json_success(actions=actions, dry_run=True)
sys.exit(0)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
error_type = "AlreadyLocked"
else:
error_type = "RuntimeError"
common.exception_and_exit(e, error_type=error_type, json=args.json)
except SystemExit as e:
common.exception_and_exit(e, json=args.json)
if newenv:
touch_nonadmin(prefix)
if not args.json:
print_activate(args.name if args.name else prefix)
if args.json:
common.stdout_json_success(actions=actions)
def install(args, parser, command='install'):
"""
conda install, conda update, and conda create
"""
newenv = bool(command == 'create')
isupdate = bool(command == 'update')
isinstall = bool(command == 'install')
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = common.get_prefix(args, search=not newenv)
if newenv:
check_prefix(prefix, json=args.json)
if force_32bit and plan.is_root_prefix(prefix):
common.error_and_exit("cannot use CONDA_FORCE_32BIT=1 in root env")
if isupdate and not (args.file or args.all or args.packages):
common.error_and_exit("""no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
""" % prefix,
json=args.json,
error_type="ValueError")
linked = ci.linked(prefix)
lnames = {ci.name_dist(d) for d in linked}
if isupdate and not args.all:
for name in args.packages:
common.arg2spec(name, json=args.json, update=True)
if name not in lnames:
common.error_and_exit("Package '%s' is not installed in %s" %
(name, prefix),
json=args.json,
error_type="ValueError")
if newenv and not args.no_default_packages:
default_packages = create_default_packages[:]
# Override defaults if they are specified at the command line
for default_pkg in create_default_packages:
if any(pkg.split('=')[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
else:
default_packages = []
common.ensure_use_local(args)
common.ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
specs = []
if args.file:
for fpath in args.file:
specs.extend(common.specs_from_url(fpath, json=args.json))
if '@EXPLICIT' in specs:
misc.explicit(specs, prefix, verbose=not args.quiet)
return
elif getattr(args, 'all', False):
if not linked:
common.error_and_exit("There are no packages installed in the "
"prefix %s" % prefix)
specs.extend(nm for nm in lnames)
specs.extend(common.specs_from_args(args.packages, json=args.json))
if isinstall and args.revision:
get_revision(args.revision, json=args.json)
elif not (newenv and args.clone):
common.check_specs(prefix, specs, json=args.json,
create=(command == 'create'))
num_cp = sum(s.endswith('.tar.bz2') for s in args.packages)
if num_cp:
if num_cp == len(args.packages):
misc.explicit(args.packages, prefix, verbose=not args.quiet)
return
else:
common.error_and_exit(
"cannot mix specifications with conda package filenames",
json=args.json,
error_type="ValueError")
# handle tar file containing conda packages
if len(args.packages) == 1:
tar_path = args.packages[0]
if tar_path.endswith('.tar'):
install_tar(prefix, tar_path, verbose=not args.quiet)
return
if newenv and args.clone:
if set(args.packages) - set(default_packages):
common.error_and_exit('did not expect any arguments for --clone',
json=args.json,
error_type="ValueError")
clone(args.clone, prefix, json=args.json, quiet=args.quiet,
fetch_args={'use_cache': args.use_index_cache,
'unknown': args.unknown})
misc.append_env(prefix)
misc.touch_nonadmin(prefix)
if not args.json:
print_activate(args.name if args.name else prefix)
return
index = common.get_index_trap(channel_urls=channel_urls,
prepend=not args.override_channels,
use_local=args.use_local,
use_cache=args.use_index_cache,
unknown=args.unknown,
json=args.json,
offline=args.offline,
prefix=prefix)
r = Resolve(index)
ospecs = list(specs)
plan.add_defaults_to_specs(r, linked, specs, update=isupdate)
# Don't update packages that are already up-to-date
if isupdate and not (args.all or args.force):
orig_packages = args.packages[:]
installed_metadata = [ci.is_linked(prefix, dist) for dist in linked]
for name in orig_packages:
vers_inst = [m['version'] for m in installed_metadata if m['name'] == name]
build_inst = [m['build_number'] for m in installed_metadata if m['name'] == name]
try:
assert len(vers_inst) == 1, name
assert len(build_inst) == 1, name
except AssertionError as e:
if args.json:
common.exception_and_exit(e, json=True)
else:
raise
pkgs = sorted(r.get_pkgs(name))
if not pkgs:
# Shouldn't happen?
continue
latest = pkgs[-1]
if (latest.version == vers_inst[0] and
latest.build_number == build_inst[0]):
args.packages.remove(name)
if not args.packages:
from conda.cli.main_list import print_packages
if not args.json:
regex = '^(%s)$' % '|'.join(orig_packages)
print('# All requested packages already installed.')
print_packages(prefix, regex)
else:
common.stdout_json_success(
message='All requested packages already installed.')
return
if args.force:
args.no_deps = True
if args.no_deps:
only_names = set(s.split()[0] for s in ospecs)
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
common.error_and_exit("Error: could not create directory: %s" % prefix,
json=args.json,
error_type="OSError")
else:
common.error_and_exit("""\
environment does not exist: %s
#
# Use 'conda create' to create an environment before installing packages
# into it.
#""" % prefix,
json=args.json,
error_type="NoEnvironmentFound")
try:
if isinstall and args.revision:
actions = plan.revert_actions(prefix, get_revision(args.revision))
else:
with common.json_progress_bars(json=args.json and not args.quiet):
actions = plan.install_actions(prefix, index, specs,
force=args.force,
only_names=only_names,
pinned=args.pinned,
always_copy=args.copy,
minimal_hint=args.alt_hint,
update_deps=args.update_deps)
except NoPackagesFound as e:
error_message = e.args[0]
if isupdate and args.all:
# Packages not found here just means they were installed but
# cannot be found any more. Just skip them.
if not args.json:
print("Warning: %s, skipping" % error_message)
else:
# Not sure what to do here
pass
args._skip = getattr(args, '_skip', ['anaconda'])
for pkg in e.pkgs:
p = pkg.split()[0]
if p in args._skip:
# Avoid infinite recursion. This can happen if a spec
# comes from elsewhere, like --file
raise
args._skip.append(p)
return install(args, parser, command=command)
else:
packages = {index[fn]['name'] for fn in index}
nfound = 0
for pkg in sorted(e.pkgs):
pkg = pkg.split()[0]
if pkg in packages:
continue
close = get_close_matches(pkg, packages, cutoff=0.7)
if not close:
continue
if nfound == 0:
error_message += "\n\nClose matches found; did you mean one of these?\n"
error_message += "\n %s: %s" % (pkg, ', '.join(close))
nfound += 1
error_message += '\n\nYou can search for packages on anaconda.org with'
error_message += '\n\n anaconda search -t conda %s' % pkg
if len(e.pkgs) > 1:
# Note this currently only happens with dependencies not found
error_message += '\n\n(and similarly for the other packages)'
if not find_executable('anaconda', include_others=False):
error_message += '\n\nYou may need to install the anaconda-client'
error_message += ' command line client with'
error_message += '\n\n conda install anaconda-client'
pinned_specs = plan.get_pinned_specs(prefix)
if pinned_specs:
path = join(prefix, 'conda-meta', 'pinned')
error_message += "\n\nNote that you have pinned specs in %s:" % path
error_message += "\n\n %r" % pinned_specs
common.error_and_exit(error_message, json=args.json)
except (Unsatisfiable, SystemExit) as e:
# Unsatisfiable package specifications/no such revision/import error
error_type = 'UnsatisfiableSpecifications'
if e.args and 'could not import' in e.args[0]:
error_type = 'ImportError'
common.exception_and_exit(e, json=args.json, newline=True,
error_text=False,
error_type=error_type)
if plan.nothing_to_do(actions):
from conda.cli.main_list import print_packages
if not args.json:
regex = '^(%s)$' % '|'.join(s.split()[0] for s in ospecs)
print('\n# All requested packages already installed.')
print_packages(prefix, regex)
else:
common.stdout_json_success(
message='All requested packages already installed.')
return
if not args.json:
print()
print("Package plan for installation in environment %s:" % prefix)
plan.display_actions(actions, index, show_channel_urls=args.show_channel_urls)
if command in {'install', 'update'}:
common.check_write(command, prefix)
if not args.json:
common.confirm_yn(args)
elif args.dry_run:
common.stdout_json_success(actions=actions, dry_run=True)
sys.exit(0)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
if not (command == 'update' and args.all):
try:
with open(join(prefix, 'conda-meta', 'history'), 'a') as f:
f.write('# %s specs: %s\n' % (command, specs))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
error_type = "AlreadyLocked"
else:
error_type = "RuntimeError"
common.exception_and_exit(e, error_type=error_type, json=args.json)
except SystemExit as e:
common.exception_and_exit(e, json=args.json)
if newenv:
misc.append_env(prefix)
misc.touch_nonadmin(prefix)
if not args.json:
print_activate(args.name if args.name else prefix)
if args.json:
common.stdout_json_success(actions=actions)
def execute(args, parser):
import conda.plan as plan
import conda.instructions as inst
from conda.gateways.disk.delete import rm_rf
from conda.core.linked_data import linked_data
if not (args.all or args.package_names):
raise CondaValueError('no package names supplied,\n'
' try "conda remove -h" for more details')
prefix = context.prefix_w_legacy_search
if args.all and prefix == context.default_prefix:
msg = "cannot remove current environment. deactivate and run conda remove again"
raise CondaEnvironmentError(msg)
check_write('remove', prefix, json=context.json)
ensure_use_local(args)
ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
if not args.features and args.all:
index = linked_data(prefix)
index = {dist: info for dist, info in iteritems(index)}
else:
index = get_index(channel_urls=channel_urls,
prepend=not args.override_channels,
use_local=args.use_local,
use_cache=args.use_index_cache,
prefix=prefix)
specs = None
if args.features:
features = set(args.package_names)
actions = plan.remove_features_actions(prefix, index, features)
elif args.all:
if plan.is_root_prefix(prefix):
raise CondaEnvironmentError(
'cannot remove root environment,\n'
' add -n NAME or -p PREFIX option')
actions = {inst.PREFIX: prefix}
for dist in sorted(iterkeys(index)):
plan.add_unlink(actions, dist)
else:
specs = specs_from_args(args.package_names)
# import pdb; pdb.set_trace()
if (context.conda_in_root and plan.is_root_prefix(prefix)
and names_in_specs(ROOT_NO_RM, specs) and not args.force):
raise CondaEnvironmentError(
'cannot remove %s from root environment' %
', '.join(ROOT_NO_RM))
actions = plan.remove_actions(prefix,
specs,
index=index,
force=args.force,
pinned=args.pinned)
delete_trash()
if plan.nothing_to_do(actions):
if args.all:
print("\nRemove all packages in environment %s:\n" % prefix,
file=sys.stderr)
if not context.json:
confirm_yn(args)
rm_rf(prefix)
if context.json:
stdout_json({'success': True, 'actions': actions})
return
raise PackageNotFoundError(
'', 'no packages found to remove from '
'environment: %s' % prefix)
if not context.json:
print()
print("Package plan for package removal in environment %s:" % prefix)
plan.display_actions(actions, index)
if context.json and args.dry_run:
stdout_json({'success': True, 'dry_run': True, 'actions': actions})
return
if not context.json:
confirm_yn(args)
if context.json and not context.quiet:
with json_progress_bars():
plan.execute_actions(actions, index, verbose=not context.quiet)
else:
plan.execute_actions(actions, index, verbose=not context.quiet)
if specs:
try:
with open(join(prefix, 'conda-meta', 'history'), 'a') as f:
f.write('# remove specs: %s\n' % ','.join(specs))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise
if args.all:
rm_rf(prefix)
if context.json:
stdout_json({'success': True, 'actions': actions})
def execute(args, parser):
import sys
import conda.plan as plan
from conda.cli import pscheck
from conda.install import rm_rf, linked
from conda import config
if not (args.all or args.package_names):
common.error_and_exit(
'no package names supplied,\n'
' try "conda remove -h" for more details',
json=args.json,
error_type="ValueError")
prefix = common.get_prefix(args)
common.check_write('remove', prefix, json=args.json)
common.ensure_override_channels_requires_channel(args, json=args.json)
channel_urls = args.channel or ()
index = common.get_index_trap(channel_urls=channel_urls,
use_cache=args.use_index_cache,
prepend=not args.override_channels,
json=args.json)
if args.features:
features = set(args.package_names)
actions = plan.remove_features_actions(prefix, index, features)
elif args.all:
if plan.is_root_prefix(prefix):
common.error_and_exit(
'cannot remove root environment,\n'
' add -n NAME or -p PREFIX option',
json=args.json,
error_type="CantRemoveRoot")
actions = {plan.PREFIX: prefix, plan.UNLINK: sorted(linked(prefix))}
else:
specs = common.specs_from_args(args.package_names)
if (plan.is_root_prefix(prefix)
and common.names_in_specs(common.root_no_rm, specs)):
common.error_and_exit('cannot remove %s from root environment' %
', '.join(common.root_no_rm),
json=args.json,
error_type="CantRemoveFromRoot")
actions = plan.remove_actions(prefix, specs, pinned=args.pinned)
if plan.nothing_to_do(actions):
if args.all:
rm_rf(prefix)
if args.json:
common.stdout_json({'success': True, 'actions': actions})
return
common.error_and_exit('no packages found to remove from '
'environment: %s' % prefix,
json=args.json,
error_type="PackageNotInstalled")
if not args.json:
print()
print("Package plan for package removal in environment %s:" % prefix)
plan.display_actions(actions, index)
if args.json and args.dry_run:
common.stdout_json({
'success': True,
'dry_run': True,
'actions': actions
})
return
if not args.json:
if not pscheck.main(args):
common.confirm_yn(args)
elif (sys.platform == 'win32' and not args.force_pscheck
and not pscheck.check_processes(verbose=False)):
common.error_and_exit(
"Cannot continue removal while processes "
"from packages are running without --force-pscheck.",
json=True,
error_type="ProcessesStillRunning")
if args.json and not args.quiet:
with json_progress_bars():
plan.execute_actions(actions, index, verbose=not args.quiet)
else:
plan.execute_actions(actions, index, verbose=not args.quiet)
if args.all:
rm_rf(prefix)
if args.json:
common.stdout_json({'success': True, 'actions': actions})
def execute(args, parser):
import sys
import conda.plan as plan
from conda.cli import pscheck
from conda.install import rm_rf, linked
from conda import config
if not (args.all or args.package_names):
common.error_and_exit(
'no package names supplied,\n'
' try "conda remove -h" for more details',
json=args.json,
error_type="ValueError")
prefix = common.get_prefix(args)
if args.all and prefix == config.default_prefix:
common.error_and_exit(
"cannot remove current environment. deactivate and run conda remove again"
)
common.check_write('remove', prefix, json=args.json)
common.ensure_override_channels_requires_channel(args, json=args.json)
channel_urls = args.channel or ()
if args.use_local:
from conda.fetch import fetch_index
from conda.utils import url_path
try:
from conda_build.config import croot
except ImportError:
common.error_and_exit(
"you need to have 'conda-build >= 1.7.1' installed"
" to use the --use-local option",
json=args.json,
error_type="RuntimeError")
# remove the cache such that a refetch is made,
# this is necessary because we add the local build repo URL
fetch_index.cache = {}
index = common.get_index_trap(channel_urls=[url_path(croot)] +
list(channel_urls),
prepend=not args.override_channels,
use_cache=args.use_index_cache,
json=args.json)
else:
index = common.get_index_trap(channel_urls=channel_urls,
prepend=not args.override_channels,
use_cache=args.use_index_cache,
json=args.json)
if args.features:
features = set(args.package_names)
actions = plan.remove_features_actions(prefix, index, features)
elif args.all:
if plan.is_root_prefix(prefix):
common.error_and_exit(
'cannot remove root environment,\n'
' add -n NAME or -p PREFIX option',
json=args.json,
error_type="CantRemoveRoot")
actions = {plan.PREFIX: prefix, plan.UNLINK: sorted(linked(prefix))}
else:
specs = common.specs_from_args(args.package_names)
if (plan.is_root_prefix(prefix)
and common.names_in_specs(common.root_no_rm, specs)):
common.error_and_exit('cannot remove %s from root environment' %
', '.join(common.root_no_rm),
json=args.json,
error_type="CantRemoveFromRoot")
actions = plan.remove_actions(prefix,
specs,
index=index,
pinned=args.pinned)
if plan.nothing_to_do(actions):
if args.all:
rm_rf(prefix)
if args.json:
common.stdout_json({'success': True, 'actions': actions})
return
common.error_and_exit('no packages found to remove from '
'environment: %s' % prefix,
json=args.json,
error_type="PackageNotInstalled")
if not args.json:
print()
print("Package plan for package removal in environment %s:" % prefix)
plan.display_actions(actions, index)
if args.json and args.dry_run:
common.stdout_json({
'success': True,
'dry_run': True,
'actions': actions
})
return
if not args.json:
if not pscheck.main(args):
common.confirm_yn(args)
elif (sys.platform == 'win32' and not args.force_pscheck
and not pscheck.check_processes(verbose=False)):
common.error_and_exit(
"Cannot continue removal while processes "
"from packages are running without --force-pscheck.",
json=True,
error_type="ProcessesStillRunning")
if args.json and not args.quiet:
with json_progress_bars():
plan.execute_actions(actions, index, verbose=not args.quiet)
else:
plan.execute_actions(actions, index, verbose=not args.quiet)
if args.all:
rm_rf(prefix)
if args.json:
common.stdout_json({'success': True, 'actions': actions})
def execute(args, parser):
import conda.plan as plan
import conda.instructions as inst
from conda.install import rm_rf, linked
from conda import config
if not (args.all or args.package_names):
common.error_and_exit(
'no package names supplied,\n'
' try "conda remove -h" for more details',
json=args.json,
error_type="ValueError")
prefix = common.get_prefix(args)
if args.all and prefix == config.default_prefix:
common.error_and_exit(
"cannot remove current environment. deactivate and run conda remove again"
)
common.check_write('remove', prefix, json=args.json)
common.ensure_override_channels_requires_channel(args, json=args.json)
channel_urls = args.channel or ()
if args.use_local:
from conda.fetch import fetch_index
from conda.utils import url_path
try:
from conda_build.config import croot
except ImportError:
common.error_and_exit(
"you need to have 'conda-build >= 1.7.1' installed"
" to use the --use-local option",
json=args.json,
error_type="RuntimeError")
# remove the cache such that a refetch is made,
# this is necessary because we add the local build repo URL
fetch_index.cache = {}
if exists(croot):
channel_urls = [url_path(croot)] + list(channel_urls)
index = common.get_index_trap(channel_urls=channel_urls,
prepend=not args.override_channels,
use_cache=args.use_index_cache,
json=args.json,
offline=args.offline)
else:
index = common.get_index_trap(channel_urls=channel_urls,
prepend=not args.override_channels,
use_cache=args.use_index_cache,
json=args.json,
offline=args.offline)
specs = None
if args.features:
features = set(args.package_names)
actions = plan.remove_features_actions(prefix, index, features)
elif args.all:
if plan.is_root_prefix(prefix):
common.error_and_exit(
'cannot remove root environment,\n'
' add -n NAME or -p PREFIX option',
json=args.json,
error_type="CantRemoveRoot")
actions = {inst.PREFIX: prefix}
for dist in sorted(linked(prefix)):
plan.add_unlink(actions, dist)
else:
specs = common.specs_from_args(args.package_names)
if (plan.is_root_prefix(prefix)
and common.names_in_specs(common.root_no_rm, specs)):
common.error_and_exit('cannot remove %s from root environment' %
', '.join(common.root_no_rm),
json=args.json,
error_type="CantRemoveFromRoot")
actions = plan.remove_actions(prefix,
specs,
index=index,
pinned=args.pinned)
if plan.nothing_to_do(actions):
if args.all:
rm_rf(prefix)
if args.json:
common.stdout_json({'success': True, 'actions': actions})
return
common.error_and_exit('no packages found to remove from '
'environment: %s' % prefix,
json=args.json,
error_type="PackageNotInstalled")
if not args.json:
print()
print("Package plan for package removal in environment %s:" % prefix)
plan.display_actions(actions, index)
if args.json and args.dry_run:
common.stdout_json({
'success': True,
'dry_run': True,
'actions': actions
})
return
if not args.json:
common.confirm_yn(args)
if args.json and not args.quiet:
with json_progress_bars():
plan.execute_actions(actions, index, verbose=not args.quiet)
else:
plan.execute_actions(actions, index, verbose=not args.quiet)
if specs:
try:
with open(join(prefix, 'conda-meta', 'history'), 'a') as f:
f.write('# remove specs: %s\n' % specs)
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise
if args.all:
rm_rf(prefix)
if args.json:
common.stdout_json({'success': True, 'actions': actions})