def register_post(self):
if (c.userid != "false"):
redirect(url('/users/register?m=3'))
if request.method == 'POST':
c.form = RegisterForm(request.POST)
if c.form.is_valid():
newuser = model.user()
# check to see if email allready exists
email_users = meta.Session.query(model.user)
if (validate_email(c.form.cleaned_data['email'])):
c.email = "invalid"
print("invalid email")
return render("/users/register.mako")
newuser.email = c.form.cleaned_data['email']
newuser.organization = c.form.cleaned_data['organization']
newuser.password = c.form.cleaned_data['password']
print("c.form.cleaned_data['password']",
c.form.cleaned_data['password'])
newuser.salt = "salt"
meta.Session.add(newuser)
meta.Session.commit()
return render("/users/succ_register.mako")
else:
c.form = RegisterForm(request.POST)
return render("/users/register.mako")
def register_post(self):
if (c.userid != "false"):
redirect(url('/users/register?m=3'))
if request.method == 'POST':
c.form = RegisterForm(request.POST)
if c.form.is_valid():
newuser= model.user()
# check to see if email allready exists
email_users = meta.Session.query(model.user)
if (validate_email(c.form.cleaned_data['email'])):
c.email = "invalid"
print "invalid email"
return render("/users/register.mako")
newuser.email = c.form.cleaned_data['email']
newuser.organization = c.form.cleaned_data['organization']
newuser.password = c.form.cleaned_data['password']
print "c.form.cleaned_data['password']", c.form.cleaned_data['password']
newuser.salt = "salt"
meta.Session.add(newuser)
meta.Session.commit()
return render("/users/succ_register.mako")
else:
c.form = RegisterForm(request.POST)
return render("/users/register.mako")
def login_validate(self):
if (c.userid != "false"):
redirect(url('/users/login?m=2'))
session['logged_in'] = True
session.save()
if request.method == 'POST':
c.form = LoginForm(request.POST)
if c.form.is_valid():
userid = authenticate_user(c.form.cleaned_data['email'], \
c.form.cleaned_data['password'])
print "hellooooo", c.form.cleaned_data['email'], c.form.cleaned_data['password']
if (userid != "invalid" ):
session['userid'] = userid
session.save()
print session['userid']
redirect(url('/'))
c.login = "******"
else:
c.login = "******"
else:
c.form = LoginForm(request.POST)
return render("/users/login.mako")
def job_table_view(self):
user_jobs = meta.Session.query(model.job).all()
c.jobs = paginate.Page(user_jobs, items_per_page=10)
total_pages = len(user_jobs)/10 + 1
#jobs = meta.Session.query(model.job)
#if (len(user_jobs)!=0):
# print "\njobs------\n",jobs.first().jobinfo[1].key, jobs.first().jobinfo[1].value
# to check if user visiting this page for the first time and
#assign the latest jobs page,page_num tell which page to show
page_num = total_pages
if ('page' in request.params) and request.params['page']. isdigit() and (int(request.params['page']) <= total_pages):
page_num =int(request.params['page'])
if 'm' in request.params:
c.display_message = "Job successfully submitted and your Job ID is " \
+ str(request.params['id'])
c.jobs = paginate.Page(user_jobs, page=page_num, items_per_page=10)
c.pagenums=c.jobs.pager()
c.pagenumber = page_num
return render("/job_table_view.mako")
def job_insert(self):
if (c.userid == "false"):
redirect(url('/users/login?m=1'))
#extra_questions = get_questions(request)
#form = UserCreationForm(request.POST or None, extra=extra_questions)
if request.method == 'POST':
appname = request.POST['appname']
if (appname =='tophatfusion'):
c.form = tophatfusionForm(request.POST,request.POST )
elif (appname =='bfast') :
c.form = bfastForm(request.POST,request.POST )
elif (appname =='chipseq') :
c.form = chipseqForm(request.POST,request.POST )
if c.form.is_valid():
#add using job queue
jobid =add_job(c.userid)
for key in c.form.cleaned_data:
print "key", key
print "value", c.form.cleaned_data[key]
newjobinfo = model.jobinfo()
newjobinfo.key = key
newjobinfo.value = c.form.cleaned_data[key]
newjobinfo.submitted_time = time.asctime()
newjobinfo.jobid = jobid
add_jobinfo(newjobinfo)
update_job_status(jobid, str(JOBSTATES.NEW))
redirect(url('/ngs/job_table_view?m=1&id=' + str(jobid) ))
else:
return render('/forms/chipseq_form.mako')
def job_insert(self):
if (c.userid == "false"):
redirect(url('/users/login?m=1'))
#extra_questions = get_questions(request)
#form = UserCreationForm(request.POST or None, extra=extra_questions)
if request.method == 'POST':
appname = request.POST['appname']
if (appname =='tophatfusion'):
c.form = tophatfusionForm(request.POST,request.POST )
elif (appname =='bfast') :
c.form = bfastForm(request.POST,request.POST )
elif (appname =='chipseq') :
c.form = chipseqForm(request.POST,request.POST )
if c.form.is_valid():
#add using job queue
jobid =add_job(c.userid)
for key in c.form.cleaned_data:
print("key", key)
print("value", c.form.cleaned_data[key])
newjobinfo = model.jobinfo()
newjobinfo.key = key
newjobinfo.value = c.form.cleaned_data[key]
newjobinfo.submitted_time = time.asctime()
newjobinfo.jobid = jobid
add_jobinfo(newjobinfo)
update_job_status(jobid, str(JOBSTATES.NEW))
redirect(url('/ngs/job_table_view?m=1&id=' + str(jobid) ))
else:
return render('/forms/chipseq_form.mako')
def job_table_view(self):
user_jobs = meta.Session.query(model.job).all()
c.jobs = paginate.Page(user_jobs, items_per_page=10)
total_pages = len(user_jobs)/10 + 1
#jobs = meta.Session.query(model.job)
#if (len(user_jobs)!=0):
# print "\njobs------\n",jobs.first().jobinfo[1].key, jobs.first().jobinfo[1].value
# to check if user visiting this page for the first time and
#assign the latest jobs page,page_num tell which page to show
page_num = total_pages
if ('page' in request.params) and request.params['page']. isdigit() and (int(request.params['page']) <= total_pages):
page_num =int(request.params['page'])
if 'm' in request.params:
c.display_message = "Job successfully submitted and your Job ID is " \
+ str(request.params['id'])
c.jobs = paginate.Page(user_jobs, page=page_num, items_per_page=10)
c.pagenums=c.jobs.pager()
c.pagenumber = page_num
return render("/job_table_view.mako")
def login_validate(self):
if (c.userid != "false"):
redirect(url('/users/login?m=2'))
session['logged_in'] = True
session.save()
if request.method == 'POST':
c.form = LoginForm(request.POST)
if c.form.is_valid():
userid = authenticate_user(c.form.cleaned_data['email'], \
c.form.cleaned_data['password'])
print("hellooooo", c.form.cleaned_data['email'],
c.form.cleaned_data['password'])
if (userid != "invalid"):
session['userid'] = userid
session.save()
print(session['userid'])
redirect(url('/'))
c.login = "******"
else:
c.login = "******"
else:
c.form = LoginForm(request.POST)
return render("/users/login.mako")
def register(self):
if 'm' in request.params:
m = request.params['m']
if (int(m) ==3):
c.display_message = "Please log out before you register "
elif (c.userid != "false"):
redirect(url('/users/regitser?m=3'))
c.form = RegisterForm()
return render('/users/register.mako')
def register(self):
if 'm' in request.params:
m = request.params['m']
if (int(m) == 3):
c.display_message = "Please log out before you register "
elif (c.userid != "false"):
redirect(url('/users/regitser?m=3'))
c.form = RegisterForm()
return render('/users/register.mako')
def login(self):
#h.flash('Please login')
if 'm' in request.params:
m = request.params['m']
if (int(m) ==1):
c.display_message = "Please log in before you submit a job "
if (int(m) ==2):
c.display_message = "Please log out before you login "
if (int(m) ==4):
c.display_message = "Please log in before you delete a job "
elif (c.userid != "false"):
redirect(url('/users/login?m=2'))
c.form = LoginForm()
return render('/users/login.mako')
def login(self):
#h.flash('Please login')
if 'm' in request.params:
m = request.params['m']
if (int(m) == 1):
c.display_message = "Please log in before you submit a job "
if (int(m) == 2):
c.display_message = "Please log out before you login "
if (int(m) == 4):
c.display_message = "Please log in before you delete a job "
elif (c.userid != "false"):
redirect(url('/users/login?m=2'))
c.form = LoginForm()
return render('/users/login.mako')
def dalliance(self):
""" dalliance visual"""
return render('/dalliance.mako')
def bfast_form(self):
if (c.userid == "false"):
redirect(url('/users/login?m=1'))
c.form = bfastForm()
return render('/forms/bfast_form.mako')
def using_bfast(self):
return render('/pages/using_bfast.mako')
def resources(self):
return render('/pages/resources.mako')
def software(self):
return render('/pages/software.mako')
def about(self):
return render('/pages/about.mako')
def using_tophatfusion(self):
return render('/pages/using_tophatfusion.mako')
def tophatfusion_form(self):
if (c.userid == "false"):
redirect(url('/users/login?m=1'))
c.form = tophatfusionForm()
return render('/forms/tophatfusion_form.mako')
def using_chipseq(self):
return render('/pages/using_chipseq.mako')
def contact(self):
return render('/pages/contact.mako')
def bfast_form(self):
if (c.userid == "false"):
redirect(url('/users/login?m=1'))
c.form = bfastForm()
return render('/forms/bfast_form.mako')
def software(self):
return render('/pages/software.mako')
def trac(self):
return render('/pages/trac.mako')
def resources(self):
return render('/pages/resources.mako')
def chipseq_form(self):
if (c.userid == "false"):
redirect(url('/users/login?m=1'))
c.form = chipseqForm()
return render('/forms/chipseq_form.mako')
def about(self):
return render('/pages/about.mako')
def index(self):
return render('/pages/index.mako')
def index(self):
return render('/pages/index.mako')
def using_chipseq(self):
return render('/pages/using_chipseq.mako')
def tophatfusion_view(self):
""" dalliance visual"""
jobid= request.params['id']
if jobid is None:
redirect(url('/ngs/job_table_view'))
return render('/results/result_'+ jobid+'.mako')
def using_bfast(self):
return render('/pages/using_bfast.mako')
def chipseq_form(self):
if (c.userid == "false"):
redirect(url('/users/login?m=1'))
c.form = chipseqForm()
return render('/forms/chipseq_form.mako')
def trac(self):
return render('/pages/trac.mako')
def dalliance(self):
""" dalliance visual"""
return render('/dalliance.mako')
def contact(self):
return render('/pages/contact.mako')
def tophatfusion_view(self):
""" dalliance visual"""
jobid= request.params['id']
if jobid is None:
redirect(url('/ngs/job_table_view'))
return render('/results/result_'+ jobid+'.mako')
def tophatfusion_form(self):
if (c.userid == "false"):
redirect(url('/users/login?m=1'))
c.form = tophatfusionForm()
return render('/forms/tophatfusion_form.mako')
def using_tophatfusion(self):
return render('/pages/using_tophatfusion.mako')