# date (MM/DD/YYYY)
# long (decimal degrees)
# lat (decimal degrees)
# species
import dycast
import optparse
usage = "usage: %prog [options] datafile.tsv"
p = optparse.OptionParser(usage)
p.add_option('--config',
'-c',
default="./dycast.config",
help="load config file FILE",
metavar="FILE")
options, arguments = p.parse_args()
config_file = options.config
dycast.read_config(config_file)
dycast.init_logging()
dycast.init_db()
# If arguments includes multiple filenames, fileinput will handle them all
for file in arguments:
(lines_read, lines_processed, lines_loaded,
lines_skipped) = dycast.load_bird_file(file)
p.add_option('--spatialdomain')
p.add_option('--temporaldomain')
options, arguments = p.parse_args()
config_file = options.config
try:
dycast.read_config(config_file)
except:
print "could not read config file:", config_file
sys.exit()
dycast.init_logging()
dycast.init_db()
(default_cs, default_ct, default_sd, default_td) = dycast.get_default_parameters()
if options.closespace:
cs = options.closespace
else:
cs = default_cs
if options.closetime:
ct = options.closetime
else:
ct = default_ct
if options.spatialdomain:
sd = options.spatialdomain
else:
sd = default_sd
def connect_to_DYCAST(self):
dycast.read_config(config_file)
dycast.init_db()
dycast.init_logging()
def connect_to_DYCAST(self):
dycast.read_config(config_file)
dycast.init_db()
dycast.init_logging()