Ejemplos de Track.getTrackView en Python

Ejemplo n.º 1

Archivo: TestTrackPreProcessor.py Proyecto: Anderrb/Dynamic-benchmark

 def _getTrackView(self, trackName, region, allowOverlaps):
     track = Track(trackName)
     track.addFormatReq(TrackFormatReq(allowOverlaps=allowOverlaps))
     return track.getTrackView(region)

Ejemplo n.º 2

Archivo: TrackIntegrationTest.py Proyecto: hyperbrowser/genomic-hyperbrowser

from gold.track.Track import Track
from gold.track.GenomeRegion import GenomeRegion
from gold.track.TrackFormat import TrackFormatReq

if __name__ == "__main__":
    track = Track(['test'])
    #trackView = track.getTrackView(None, GenomeRegion('hg18','chrM',1000,10000))
    #trackView2 = track.getTrackView(None, GenomeRegion('hg18','chrM',4000,4000))
    trackView = track.getTrackView(GenomeRegion('TestGenome', 'chr1', -1,
                                                1000))

    count = 0
    for el in trackView:
        print el.start(), el.end()
        count += 1
        if count > 50:
            break

    print len([el for el in trackView])
    #print len([el for el in trackView2])

Ejemplo n.º 3

Archivo: TestTrackPreProcessor.py Proyecto: uio-bmi/track_rand

 def _getTrackView(self, trackName, region, allowOverlaps):
     track = Track(trackName)
     track.addFormatReq(TrackFormatReq(allowOverlaps=allowOverlaps))
     return track.getTrackView(region)