def exec_(self):
if not QtGui.QDialog.exec_(self):
return
activeItem = self.ilastik.project.dataMgr[
self.ilastik._activeImageNumber]
ovm = self.ilastik.project.dataMgr[
self.ilastik._activeImageNumber].overlayMgr
try:
file_name = str(self.ui.filenameEdit.text())
if self.ui.randomColorsButton.isChecked():
transparentValues = set()
if self.ui.valueZeroTransparentCheck.isChecked():
transparentValues.add(0)
self.attrs.colorTable = OverlayItem.createDefaultColorTable(
"RGB", transparentValues=transparentValues)
elif self.ui.grayScaleButton.isChecked():
self.attrs.colorTable = OverlayItem.createDefaultColorTable(
"GRAY")
self.attrs.key = str(self.ui.nameEdit.text())
ov = dataImpex.DataImpex.importOverlay(activeItem,
file_name,
attrs=self.attrs)
if ov is None:
print "No _data item loaded"
except Exception, e:
traceback.print_exc()
print e
QtGui.QErrorMessage.qtHandler().showMessage(str(e))
def exec_(self):
if not QtGui.QDialog.exec_(self):
return
activeItem = self.ilastik.project.dataMgr[self.ilastik._activeImageNumber]
ovm = self.ilastik.project.dataMgr[self.ilastik._activeImageNumber].overlayMgr
try:
file_name = str(self.ui.filenameEdit.text())
if self.ui.randomColorsButton.isChecked():
transparentValues = set()
if self.ui.valueZeroTransparentCheck.isChecked():
transparentValues.add(0)
self.attrs.colorTable = OverlayItem.createDefaultColorTable("RGB", transparentValues=transparentValues)
elif self.ui.grayScaleButton.isChecked():
self.attrs.colorTable = OverlayItem.createDefaultColorTable("GRAY")
self.attrs.key = str(self.ui.nameEdit.text())
ov = dataImpex.DataImpex.importOverlay(activeItem, file_name, attrs=self.attrs)
if ov is None:
print "No _data item loaded"
except Exception, e:
traceback.print_exc()
print e
QtGui.QErrorMessage.qtHandler().showMessage(str(e))
def finalizeResults(self):
colortable = OverlayItem.createDefaultColorTable('RGB', 256)
#create Overlay for segmentation:
if self.dataMgr[self.dataMgr._activeImageNumber].overlayMgr["Auto Segmentation/Segmentation"] is None:
ov = OverlayItem(self.res, color = 0, alpha = 1.0, colorTable = colortable, autoAdd = True, autoVisible = True)
self.dataMgr[self.dataMgr._activeImageNumber].overlayMgr["Auto Segmentation/Segmentation"] = ov
else:
self.dataMgr[self.dataMgr._activeImageNumber].overlayMgr["Auto Segmentation/Segmentation"]._data = DataAccessor(self.res)
def finalizeResults(self):
colortable = OverlayItem.createDefaultColorTable('RGB', 256)
#create Overlay for segmentation:
if self.dataMgr[self.dataMgr._activeImageNumber].overlayMgr[
"Auto Segmentation/Segmentation"] is None:
ov = OverlayItem(self.res,
color=0,
alpha=1.0,
colorTable=colortable,
autoAdd=True,
autoVisible=True)
self.dataMgr[self.dataMgr._activeImageNumber].overlayMgr[
"Auto Segmentation/Segmentation"] = ov
else:
self.dataMgr[self.dataMgr._activeImageNumber].overlayMgr[
"Auto Segmentation/Segmentation"]._data = DataAccessor(
self.res)
