def test880(self):
try:
createTestImage(self.client.sf)
i = self.client.sf.getQueryService().findAll("Image", params.theFilter)[0]
self.assert_(i != None)
self.assert_(i.id != None)
self.assert_(i.details != None)
except omero.ValidationException, ve:
print " test880 - createTestImage has failed. This fixture method needs to be fixed."
def test880(self):
try:
createTestImage(self.client.sf)
i = self.client.sf.getQueryService().findAll("Image", params.theFilter)[0]
self.assert_(i != None)
self.assert_(i.id != None)
self.assert_(i.details != None)
except omero.ValidationException, ve:
print " test880 - createTestImage has failed. This fixture method needs to be fixed."
def test1179(self):
createTestImage(self.root.sf)
rdefs = self.root.sf.getQueryService().findAll("RenderingDef", None)
if len(rdefs) == 0:
raise "Must have at least one rendering def"
share = self.root.sf.getShareService()
sid = share.createShare("", None, [], [], [], True)
share.activate(sid)
tb = self.root.sf.createThumbnailStore()
try:
tb.setPixelsId(rdefs[0].pixels.id.val)
except omero.SecurityViolation:
self.fail("Pixels was not in share")
def test1179(self):
createTestImage(self.root.sf)
rdefs = self.root.sf.getQueryService().findAll("RenderingDef", None)
if len(rdefs) == 0:
raise "Must have at least one rendering def"
share = self.root.sf.getShareService()
sid = share.createShare("", None, [], [], [], True)
share.activate(sid)
tb = self.root.sf.createThumbnailStore()
try:
tb.setPixelsId(rdefs[0].pixels.id.val)
except omero.SecurityViolation:
self.fail("Pixels was not in share")
def testBasicUsage(self):
gateway = self.client.sf.createGateway()
gateway.getProjects([0], False)
try:
# query below does not find image if created with self.createTestImage() even though it
# uses 'identical' code to createTestImage(self.client.sf), which uses script_utils
# iid = self.createTestImage().getId().getValue()
iid = createTestImage(self.client.sf)
print iid, type(iid)
query = self.client.sf.getQueryService()
params = omero.sys.Parameters()
params.map = {}
params.map["oid"] = rlong(iid)
params.theFilter = omero.sys.Filter()
params.theFilter.offset = rint(0)
params.theFilter.limit = rint(1)
pixel = query.findByQuery(
"select p from Pixels as p left outer join fetch p.image as i where i.id=:oid", params
)
print pixel
imgid = pixel.image.id.val
print imgid
gateway.getRenderedImage(pixel.id.val, 0, 0)
except omero.ValidationException, ve:
print " testBasicUsage - createTestImage has failed. This fixture method needs to be fixed."
def testBasicUsage(self):
gateway = self.client.sf.createGateway()
gateway.getProjects([0], False)
try:
# query below does not find image if created with self.createTestImage() even though it
# uses 'identical' code to createTestImage(self.client.sf), which uses script_utils
#iid = self.createTestImage().getId().getValue()
iid = createTestImage(self.client.sf)
print iid, type(iid)
query = self.client.sf.getQueryService()
params = omero.sys.Parameters()
params.map = {}
params.map["oid"] = rlong(iid)
params.theFilter = omero.sys.Filter()
params.theFilter.offset = rint(0)
params.theFilter.limit = rint(1)
pixel = query.findByQuery(
"select p from Pixels as p left outer join fetch p.image as i where i.id=:oid",
params)
print pixel
imgid = pixel.image.id.val
print imgid
gateway.getRenderedImage(pixel.id.val, 0, 0)
except omero.ValidationException, ve:
print " testBasicUsage - createTestImage has failed. This fixture method needs to be fixed."
def test8704(self):
owner, owner_obj = self.new_client_and_user(
perms="rw----") # Owner of share
member, member_obj = self.new_client_and_user(
perms="rw----") # Different group!
member_suuid = member.sf.getAdminService().getEventContext(
).sessionUuid
owner_suuid = owner.sf.getAdminService().getEventContext().sessionUuid
member_groupId = member.sf.getAdminService().getEventContext().groupId
owner_groupId = owner.sf.getAdminService().getEventContext().groupId
self.assertFalse(member_suuid == owner_suuid) # just in case
self.assertFalse(owner_obj.id.val == member_obj.id.val) # just in case
# create image by owner
owner_update = owner.sf.getUpdateService()
image_id = createTestImage(owner.sf)
p = omero.sys.Parameters()
p.map = {"id": rlong(long(image_id))}
sql = "select im from Image im join fetch im.details.owner join fetch im.details.group where im.id=:id order by im.name"
image = owner.sf.getQueryService().findAllByQuery(
sql, p, {'omero.group': str(owner_groupId)})[0]
rdefs = owner.sf.getQueryService().findAll("RenderingDef", None)
# create image by member
member_update = member.sf.getUpdateService()
image2 = self.new_image()
image2 = member_update.saveAndReturnObject(image2)
share = owner.sf.getShareService()
sid = self.create_share(share,
objects=[image],
experimenters=[member_obj])
self.assertAccess(owner, sid)
self.assertAccess(member, sid)
member_share = member.sf.getShareService()
share_obj = member_share.getShare(sid)
# Activation shouldn't be needed any more as we pass {'omero.share': <sid>}
#member_share.activate(long(sid))
# And the member should be able to use omero.share:sid
member_query = member.sf.getQueryService()
try:
rv = member.sf.getQueryService().find("Image", image.id.val, None)
except omero.SecurityViolation, sv:
pass
def test8704(self):
owner, owner_obj = self.new_client_and_user(perms="rw----") # Owner of share
member, member_obj = self.new_client_and_user(perms="rw----") # Different group!
member_suuid = member.sf.getAdminService().getEventContext().sessionUuid
owner_suuid = owner.sf.getAdminService().getEventContext().sessionUuid
member_groupId = member.sf.getAdminService().getEventContext().groupId
owner_groupId = owner.sf.getAdminService().getEventContext().groupId
self.assertFalse(member_suuid == owner_suuid) # just in case
self.assertFalse(owner_obj.id.val == member_obj.id.val) # just in case
# create image by owner
owner_update = owner.sf.getUpdateService()
image_id = createTestImage(owner.sf)
p = omero.sys.Parameters()
p.map = {"id": rlong(long(image_id))}
sql = "select im from Image im join fetch im.details.owner join fetch im.details.group where im.id=:id order by im.name"
image = owner.sf.getQueryService().findAllByQuery(sql, p, {'omero.group':str(owner_groupId)})[0]
rdefs = owner.sf.getQueryService().findAll("RenderingDef", None)
# create image by member
member_update = member.sf.getUpdateService()
image2 = self.new_image()
image2 = member_update.saveAndReturnObject(image2)
share = owner.sf.getShareService()
sid = self.create_share(share, objects=[image], experimenters=[member_obj])
self.assertAccess(owner, sid)
self.assertAccess(member, sid)
member_share = member.sf.getShareService()
share_obj = member_share.getShare(sid)
# Activation shouldn't be needed any more as we pass {'omero.share': <sid>}
#member_share.activate(long(sid))
# And the member should be able to use omero.share:sid
member_query = member.sf.getQueryService()
try:
rv = member.sf.getQueryService().find("Image", image.id.val, None)
except omero.SecurityViolation, sv:
pass
def testThumbs(self):
# root session is root.sf
uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
admin = self.root.sf.getAdminService()
group1name = "private_%s" % uuid
group2name = "read-only_%s" % uuid
group3name = "collaborative_%s" % uuid
ownerName = "owner_%s" % uuid
user1name = "user1_%s" % uuid
user2name = "user2_%s" % uuid
### create three users in 3 groups
listOfGroups = list()
listOfGroups.append(admin.lookupGroup(
"user")) # all users need to be in 'user' group to do anything!
#group1 - private
new_gr1 = ExperimenterGroupI()
new_gr1.name = rstring(group1name)
p = PermissionsI('rw----')
new_gr1.details.permissions = p
gid = admin.createGroup(new_gr1)
privateGroup = admin.getGroup(gid)
self.assertEquals('rw----', str(privateGroup.details.permissions))
listOfGroups.append(privateGroup)
#group2 - read-only
new_gr2 = ExperimenterGroupI()
new_gr2.name = rstring(group2name)
p2 = PermissionsI('rwr---')
new_gr2.details.permissions = p2
gid2 = admin.createGroup(new_gr2)
readOnlyGroup = admin.getGroup(gid2)
self.assertEquals('rwr---', str(readOnlyGroup.details.permissions))
listOfGroups.append(readOnlyGroup)
#group3 - read-annotate
new_gr3 = ExperimenterGroupI()
new_gr3.name = rstring(group3name)
p = PermissionsI('rwra--')
new_gr3.details.permissions = p
gid3 = admin.createGroup(new_gr3)
collaborativeGroup = admin.getGroup(gid3)
self.assertEquals('rwra--',
str(collaborativeGroup.details.permissions))
listOfGroups.append(collaborativeGroup)
#new user (group owner)
owner = ExperimenterI()
owner.omeName = rstring(ownerName)
owner.firstName = rstring("Group")
owner.lastName = rstring("Owner")
owner.email = rstring("*****@*****.**")
ownerId = admin.createExperimenterWithPassword(owner, rstring("ome"),
privateGroup,
listOfGroups)
newOwner = admin.getExperimenter(ownerId)
admin.setGroupOwner(privateGroup, newOwner)
admin.setGroupOwner(readOnlyGroup, newOwner)
admin.setGroupOwner(collaborativeGroup, newOwner)
#new user1
new_exp = ExperimenterI()
new_exp.omeName = rstring(user1name)
new_exp.firstName = rstring("Will")
new_exp.lastName = rstring("Moore")
new_exp.email = rstring("*****@*****.**")
eid = admin.createExperimenterWithPassword(new_exp, rstring("ome"),
privateGroup, listOfGroups)
#new user2
new_exp2 = ExperimenterI()
new_exp2.omeName = rstring(user2name)
new_exp2.firstName = rstring("User")
new_exp2.lastName = rstring("Test2")
new_exp2.email = rstring("*****@*****.**")
eid2 = admin.createExperimenterWithPassword(new_exp2, rstring("ome"),
privateGroup, listOfGroups)
## get users
user1 = admin.getExperimenter(eid)
user2 = admin.getExperimenter(eid2)
## login as user1 (into their default group)
client_share1 = self.new_client(user=user1, password="******")
print len(client_share1.sf.activeServices())
# create image in private group
privateImageId = createTestImage(client_share1.sf)
print len(client_share1.sf.activeServices())
self.getThumbnail(
client_share1.sf, privateImageId
) # if we don't get thumbnail, test fails when another user does
print len(client_share1.sf.activeServices())
# change user into read-only group. Use object Ids for this, NOT objects from a different context
a = client_share1.sf.getAdminService()
me = a.getExperimenter(a.getEventContext().userId)
a.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(client_share1, gid2)
#print a.getEventContext()
# create image and get thumbnail (in read-only group)
readOnlyImageId = createTestImage(client_share1.sf)
self.getThumbnail(client_share1.sf, readOnlyImageId)
# change user into collaborative group. Use object Ids for this, NOT objects from a different context
a.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(client_share1, gid3)
# create image and get thumbnail (in collaborative group)
collaborativeImageId = createTestImage(client_share1.sf)
self.getThumbnail(client_share1.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(client_share1.sf, privateImageId))
self.assertEquals(None,
self.getThumbnail(client_share1.sf, readOnlyImageId))
# now check that the 'owner' of each group can see all 3 thumbnails.
## login as owner (into private group)
owner_client = self.new_client(user=newOwner, password="******")
self.getThumbnail(owner_client.sf, privateImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(owner_client.sf, readOnlyImageId))
self.assertEquals(
None, self.getThumbnail(owner_client.sf, collaborativeImageId))
# change owner into read-only group.
o = client_share1.sf.getAdminService()
me = o.getExperimenter(o.getEventContext().userId)
o.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(owner_client, gid2)
self.getThumbnail(owner_client.sf, readOnlyImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(owner_client.sf, privateImageId))
self.assertEquals(
None, self.getThumbnail(owner_client.sf, collaborativeImageId))
# change owner into collaborative group.
o.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(owner_client, gid3)
self.getThumbnail(owner_client.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(owner_client.sf, privateImageId))
self.assertEquals(None,
self.getThumbnail(owner_client.sf, readOnlyImageId))
# now check that the 'user2' of each group can see all thumbnails except private.
## login as user2 (into private group)
user2_client = self.new_client(user=user2, password="******")
# check that we can't get thumbnails for any images in private group
self.assertEquals(None,
self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(None,
self.getThumbnail(user2_client.sf, readOnlyImageId))
self.assertEquals(
None, self.getThumbnail(user2_client.sf, collaborativeImageId))
# change owner into read-only group.
u = user2_client.sf.getAdminService()
me = u.getExperimenter(u.getEventContext().userId)
u.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(user2_client, gid2)
self.getThumbnail(user2_client.sf, readOnlyImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(
None, self.getThumbnail(user2_client.sf, collaborativeImageId))
# change owner into collaborative group.
u.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(user2_client, gid3)
self.getThumbnail(user2_client.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None,
self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(None,
self.getThumbnail(user2_client.sf, readOnlyImageId))
def testThumbs(self):
# root session is root.sf
uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
admin = self.root.sf.getAdminService()
group1name = "private_%s" % uuid
group2name = "read-only_%s" % uuid
group3name = "collaborative_%s" % uuid
ownerName = "owner_%s" % uuid
user1name = "user1_%s" % uuid
user2name = "user2_%s" % uuid
### create three users in 3 groups
listOfGroups = list()
listOfGroups.append(admin.lookupGroup("user")) # all users need to be in 'user' group to do anything!
#group1 - private
new_gr1 = ExperimenterGroupI()
new_gr1.name = rstring(group1name)
p = PermissionsI('rw----')
new_gr1.details.permissions = p
gid = admin.createGroup(new_gr1)
privateGroup = admin.getGroup(gid)
self.assertEquals('rw----', str(privateGroup.details.permissions))
listOfGroups.append(privateGroup)
#group2 - read-only
new_gr2 = ExperimenterGroupI()
new_gr2.name = rstring(group2name)
p2 = PermissionsI('rwr---')
new_gr2.details.permissions = p2
gid2 = admin.createGroup(new_gr2)
readOnlyGroup = admin.getGroup(gid2)
self.assertEquals('rwr---', str(readOnlyGroup.details.permissions))
listOfGroups.append(readOnlyGroup)
#group3 - read-annotate
new_gr3 = ExperimenterGroupI()
new_gr3.name = rstring(group3name)
p = PermissionsI('rwra--')
new_gr3.details.permissions = p
gid3 = admin.createGroup(new_gr3)
collaborativeGroup = admin.getGroup(gid3)
self.assertEquals('rwra--', str(collaborativeGroup.details.permissions))
listOfGroups.append(collaborativeGroup)
#new user (group owner)
owner = ExperimenterI()
owner.omeName = rstring(ownerName)
owner.firstName = rstring("Group")
owner.lastName = rstring("Owner")
owner.email = rstring("*****@*****.**")
ownerId = admin.createExperimenterWithPassword(owner, rstring("ome"), privateGroup, listOfGroups)
newOwner = admin.getExperimenter(ownerId)
admin.setGroupOwner(privateGroup, newOwner)
admin.setGroupOwner(readOnlyGroup, newOwner)
admin.setGroupOwner(collaborativeGroup, newOwner)
#new user1
new_exp = ExperimenterI()
new_exp.omeName = rstring(user1name)
new_exp.firstName = rstring("Will")
new_exp.lastName = rstring("Moore")
new_exp.email = rstring("*****@*****.**")
eid = admin.createExperimenterWithPassword(new_exp, rstring("ome"), privateGroup, listOfGroups)
#new user2
new_exp2 = ExperimenterI()
new_exp2.omeName = rstring(user2name)
new_exp2.firstName = rstring("User")
new_exp2.lastName = rstring("Test2")
new_exp2.email = rstring("*****@*****.**")
eid2 = admin.createExperimenterWithPassword(new_exp2, rstring("ome"), privateGroup, listOfGroups)
## get users
user1 = admin.getExperimenter(eid)
user2 = admin.getExperimenter(eid2)
## login as user1 (into their default group)
client_share1 = self.new_client(user=user1, password="******")
print len(client_share1.sf.activeServices())
# create image in private group
privateImageId = createTestImage(client_share1.sf)
print len(client_share1.sf.activeServices())
self.getThumbnail(client_share1.sf, privateImageId) # if we don't get thumbnail, test fails when another user does
print len(client_share1.sf.activeServices())
# change user into read-only group. Use object Ids for this, NOT objects from a different context
a = client_share1.sf.getAdminService()
me = a.getExperimenter(a.getEventContext().userId)
a.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(client_share1, gid2)
#print a.getEventContext()
# create image and get thumbnail (in read-only group)
readOnlyImageId = createTestImage(client_share1.sf)
self.getThumbnail(client_share1.sf, readOnlyImageId)
# change user into collaborative group. Use object Ids for this, NOT objects from a different context
a.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(client_share1, gid3)
# create image and get thumbnail (in collaborative group)
collaborativeImageId = createTestImage(client_share1.sf)
self.getThumbnail(client_share1.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(client_share1.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(client_share1.sf, readOnlyImageId))
# now check that the 'owner' of each group can see all 3 thumbnails.
## login as owner (into private group)
owner_client = self.new_client(user=newOwner, password="******")
self.getThumbnail(owner_client.sf, privateImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(owner_client.sf, readOnlyImageId))
self.assertEquals(None, self.getThumbnail(owner_client.sf, collaborativeImageId))
# change owner into read-only group.
o = client_share1.sf.getAdminService()
me = o.getExperimenter(o.getEventContext().userId)
o.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(owner_client, gid2)
self.getThumbnail(owner_client.sf, readOnlyImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(owner_client.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(owner_client.sf, collaborativeImageId))
# change owner into collaborative group.
o.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(owner_client, gid3)
self.getThumbnail(owner_client.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(owner_client.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(owner_client.sf, readOnlyImageId))
# now check that the 'user2' of each group can see all thumbnails except private.
## login as user2 (into private group)
user2_client = self.new_client(user=user2, password="******")
# check that we can't get thumbnails for any images in private group
self.assertEquals(None, self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(user2_client.sf, readOnlyImageId))
self.assertEquals(None, self.getThumbnail(user2_client.sf, collaborativeImageId))
# change owner into read-only group.
u = user2_client.sf.getAdminService()
me = u.getExperimenter(u.getEventContext().userId)
u.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
self.set_context(user2_client, gid2)
self.getThumbnail(user2_client.sf, readOnlyImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(user2_client.sf, collaborativeImageId))
# change owner into collaborative group.
u.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
self.set_context(user2_client, gid3)
self.getThumbnail(user2_client.sf, collaborativeImageId)
# check that we can't get thumbnails for images in other groups
self.assertEquals(None, self.getThumbnail(user2_client.sf, privateImageId))
self.assertEquals(None, self.getThumbnail(user2_client.sf, readOnlyImageId))