Ejemplo n.º 1
0
    def test_vel3dk_onegoodrow_in_beams(self):
        """
        Tests functions vel3dk_east, vel3dk_north, and vel3dk_up
        from the ion_functions.data.vel_functions module using test data
        from the VELPTMN DPS. Tests operation when only one of the rows of
        the beams variable does not contain an actionable fill value (a
        fill value in one of the first 4 columns).

        Implemented by:

        2015-06-02: Russell Desiderio. Initial code. Modified version of test_vel3dk.
                    Written to test DPA modifications to clear redmine blocker #3178.
                    NOTE: fillvalues in column 4 will cause NaN output.
                          fillvalues in column 5 will not cause NaN output.
        """

        beams = np.array([
            [1, 2, FILL, 0, 0],
            [FILL, FILL, 4, 0, 0],
            [1, 2, 4, FILL, 0],
            [FILL, 2, FILL, 0, 0],
            [1, FILL, 4, 0, 0],
            [FILL, FILL, FILL, FILL, FILL],
            [2, 3, FILL, FILL, 0],
            [2, 3, 4, FILL, 0],
            [2, 3, 4, 0, 0],
            [2, 3, FILL, 0, 0]])

        ve_calcd = vel3dk_east(
            VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT, LON, TS, VSCALE, DEPTH)
        vn_calcd = vel3dk_north(
            VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT, LON, TS, VSCALE, DEPTH)
        vu_calcd = vel3dk_up(
            VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, VSCALE)

        VE_expected = np.array([
            np.nan, np.nan,  np.nan, np.nan, np.nan,
            np.nan, np.nan,  np.nan, 1.97369869, np.nan])

        VN_expected = np.array([
            np.nan, np.nan,  np.nan, np.nan, np.nan,
            np.nan, np.nan,  np.nan, 0.0720366, np.nan])

        vU_expected = np.array([
            np.nan, np.nan,  np.nan, np.nan, np.nan,
            np.nan, np.nan,  np.nan, -0.05982637, np.nan])

        np.testing.assert_array_almost_equal(ve_calcd, VE_expected, decimal=7)
        np.testing.assert_array_almost_equal(vn_calcd, VN_expected, decimal=7)
        np.testing.assert_array_almost_equal(vu_calcd, vU_expected, decimal=7)
Ejemplo n.º 2
0
    def test_vel3dk_onebadrow_in_beams(self):
        """
        Tests functions vel3dk_east, vel3dk_north, and vel3dk_up
        from the ion_functions.data.vel_functions module using test data
        from the VELPTMN DPS. Tests operation when one of the rows of the
        beams variable contains an actionable fill value (a fill value in
        one of the first 4 columns).

        Implemented by:

        2015-06-02: Russell Desiderio. Initial code. Modified version of test_vel3dk.
                    Written to test DPA modifications to clear redmine blocker #3178.
                    NOTE: fillvalues in column 4 will cause NaN output.
                          fillvalues in column 5 will not cause NaN output.
        """

        beams = np.array([
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [1, 2, 4, FILL, 0],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, FILL],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, 0]])

        ve_calcd = vel3dk_east(
            VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT, LON, TS, VSCALE, DEPTH)
        vn_calcd = vel3dk_north(
            VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT, LON, TS, VSCALE, DEPTH)
        vu_calcd = vel3dk_up(
            VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, VSCALE)

        VE_expected = np.array([
            0.34404501, -0.01039404,  0.64049184, -0.17489265, np.nan,
            -1.09305797, -0.47947474,  0.11710443,  1.97369869, -1.6466505])

        VN_expected = np.array([
            0.91742235,  0.04629215,  0.06132321,  0.56597656, np.nan,
            0.37553716, -1.87672302, -1.12589293,  0.0720366, -0.6617893])

        vU_expected = np.array([
            -0.42452079, 0.8123358, 0.443022, 1.29753572, np.nan,
            1.21870746, 0.76989652, -0.19519593, -0.05982637, -0.51904823])

        np.testing.assert_array_almost_equal(ve_calcd, VE_expected, decimal=7)
        np.testing.assert_array_almost_equal(vn_calcd, VN_expected, decimal=7)
        np.testing.assert_array_almost_equal(vu_calcd, vU_expected, decimal=7)
Ejemplo n.º 3
0
    def test_vel3dk_onegoodrow_in_beams(self):
        """
        Tests functions vel3dk_east, vel3dk_north, and vel3dk_up
        from the ion_functions.data.vel_functions module using test data
        from the VELPTMN DPS. Tests operation when only one of the rows of
        the beams variable does not contain an actionable fill value (a
        fill value in one of the first 4 columns).

        Implemented by:

        2015-06-02: Russell Desiderio. Initial code. Modified version of test_vel3dk.
                    Written to test DPA modifications to clear redmine blocker #3178.
                    NOTE: fillvalues in column 4 will cause NaN output.
                          fillvalues in column 5 will not cause NaN output.
        2018-06-20: Russell Desiderio. Revised check values because vel3dk code was
                    corrected.
        """

        beams = np.array([[1, 2, FILL, 0, 0], [FILL, FILL, 4, 0, 0],
                          [1, 2, 4, FILL, 0], [FILL, 2, FILL, 0, 0],
                          [1, FILL, 4, 0, 0], [FILL, FILL, FILL, FILL, FILL],
                          [2, 3, FILL, FILL, 0], [2, 3, 4, FILL, 0],
                          [2, 3, 4, 0, 0], [2, 3, FILL, 0, 0]])

        ve_calcd = vel3dk_east(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                               LON, TS, VSCALE, DEPTH)
        vn_calcd = vel3dk_north(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                                LON, TS, VSCALE, DEPTH)
        vu_calcd = vel3dk_up(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, VSCALE)

        VE_expected = np.array([
            np.nan, np.nan, np.nan, np.nan, np.nan, np.nan, np.nan, np.nan,
            0.06043974, np.nan
        ])

        VN_expected = np.array([
            np.nan, np.nan, np.nan, np.nan, np.nan, np.nan, np.nan, np.nan,
            -1.82667954, np.nan
        ])

        vU_expected = np.array([
            np.nan, np.nan, np.nan, np.nan, np.nan, np.nan, np.nan, np.nan,
            0.75089539, np.nan
        ])

        np.testing.assert_array_almost_equal(ve_calcd, VE_expected, decimal=7)
        np.testing.assert_array_almost_equal(vn_calcd, VN_expected, decimal=7)
        np.testing.assert_array_almost_equal(vu_calcd, vU_expected, decimal=7)
Ejemplo n.º 4
0
    def test_vel3dk_onebadrow_in_beams(self):
        """
        Tests functions vel3dk_east, vel3dk_north, and vel3dk_up
        from the ion_functions.data.vel_functions module using test data
        from the VELPTMN DPS. Tests operation when one of the rows of the
        beams variable contains an actionable fill value (a fill value in
        one of the first 4 columns).

        Implemented by:

        2015-06-02: Russell Desiderio. Initial code. Modified version of test_vel3dk.
                    Written to test DPA modifications to clear redmine blocker #3178.
                    NOTE: fillvalues in column 4 will cause NaN output.
                          fillvalues in column 5 will not cause NaN output.
        2018-06-20: Russell Desiderio. Revised check values because vel3dk code was
                    corrected.
        """

        beams = np.array([[1, 2, 4, 0, 0], [1, 2, 4, 0, 0], [1, 2, 4, 0, 0],
                          [1, 2, 4, 0, 0], [1, 2, 4, FILL, 0], [2, 3, 4, 0, 0],
                          [2, 3, 4, 0, 0], [2, 3, 4, 0, FILL], [2, 3, 4, 0, 0],
                          [2, 3, 4, 0, 0]])

        ve_calcd = vel3dk_east(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                               LON, TS, VSCALE, DEPTH)
        vn_calcd = vel3dk_north(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                                LON, TS, VSCALE, DEPTH)
        vu_calcd = vel3dk_up(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, VSCALE)

        VE_expected = np.array([
            0.82249603, -0.22633049, 0.49801448, -0.07904969, np.nan,
            0.88336431, -1.84831136, 0.43001174, 0.06043974, 0.41225013
        ])

        VN_expected = np.array([
            0.62296765, 0.21800797, -0.14479311, 0.41739691, np.nan,
            -0.75753862, 0.88334724, 0.83473984, -1.82667954, -0.01635351
        ])

        vU_expected = np.array([
            -0.27506406, 0.75059143, 0.58418777, 1.36163388, np.nan,
            1.21113768, 0.38492693, -0.66162609, 0.75089539, -1.80239185
        ])

        np.testing.assert_array_almost_equal(ve_calcd, VE_expected, decimal=7)
        np.testing.assert_array_almost_equal(vn_calcd, VN_expected, decimal=7)
        np.testing.assert_array_almost_equal(vu_calcd, vU_expected, decimal=7)
Ejemplo n.º 5
0
    def test_vel3dk_onebadrow_in_beams(self):
        """
        Tests functions vel3dk_east, vel3dk_north, and vel3dk_up
        from the ion_functions.data.vel_functions module using test data
        from the VELPTMN DPS. Tests operation when one of the rows of the
        beams variable contains an actionable fill value (a fill value in
        one of the first 4 columns).

        Implemented by:

        2015-06-02: Russell Desiderio. Initial code. Modified version of test_vel3dk.
                    Written to test DPA modifications to clear redmine blocker #3178.
                    NOTE: fillvalues in column 4 will cause NaN output.
                          fillvalues in column 5 will not cause NaN output.
        """

        beams = np.array([[1, 2, 4, 0, 0], [1, 2, 4, 0, 0], [1, 2, 4, 0, 0],
                          [1, 2, 4, 0, 0], [1, 2, 4, FILL, 0], [2, 3, 4, 0, 0],
                          [2, 3, 4, 0, 0], [2, 3, 4, 0, FILL], [2, 3, 4, 0, 0],
                          [2, 3, 4, 0, 0]])

        ve_calcd = vel3dk_east(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                               LON, TS, VSCALE, DEPTH)
        vn_calcd = vel3dk_north(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                                LON, TS, VSCALE, DEPTH)
        vu_calcd = vel3dk_up(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, VSCALE)

        VE_expected = np.array([
            0.34404501, -0.01039404, 0.64049184, -0.17489265, np.nan,
            -1.09305797, -0.47947474, 0.11710443, 1.97369869, -1.6466505
        ])

        VN_expected = np.array([
            0.91742235, 0.04629215, 0.06132321, 0.56597656, np.nan, 0.37553716,
            -1.87672302, -1.12589293, 0.0720366, -0.6617893
        ])

        vU_expected = np.array([
            -0.42452079, 0.8123358, 0.443022, 1.29753572, np.nan, 1.21870746,
            0.76989652, -0.19519593, -0.05982637, -0.51904823
        ])

        np.testing.assert_array_almost_equal(ve_calcd, VE_expected, decimal=7)
        np.testing.assert_array_almost_equal(vn_calcd, VN_expected, decimal=7)
        np.testing.assert_array_almost_equal(vu_calcd, vU_expected, decimal=7)
Ejemplo n.º 6
0
    def test_vel3dk_allbadrows_in_beams(self):
        """
        Tests functions vel3dk_east, vel3dk_north, and vel3dk_up
        from the ion_functions.data.vel_functions module using test data
        from the VELPTMN DPS. Tests operation when all rows of the beams
        variable contain an actionable fill value (a fill value in one of
        the first 4 columns).

        Implemented by:

        2015-06-02: Russell Desiderio. Initial code. Modified version of test_vel3dk.
                    Written to test DPA modifications to clear redmine blocker #3178.
                    NOTE: fillvalues in column 4 will cause NaN output.
                          fillvalues in column 5 will not cause NaN output.
        """

        beams = np.array([[1, 2, FILL, 0, 0], [FILL, FILL, 4, 0, 0],
                          [1, 2, 4, FILL, 0], [FILL, 2, FILL, 0, 0],
                          [1, FILL, 4, 0, 0], [FILL, FILL, FILL, FILL, FILL],
                          [2, 3, FILL, FILL, 0], [2, 3, 4, FILL, 0],
                          [FILL, 3, 4, 0, 0], [2, 3, FILL, 0, 0]])

        ve_calcd = vel3dk_east(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                               LON, TS, VSCALE, DEPTH)
        vn_calcd = vel3dk_north(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                                LON, TS, VSCALE, DEPTH)
        vu_calcd = vel3dk_up(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, VSCALE)

        VE_expected = np.ones(10) * np.nan

        VN_expected = np.ones(10) * np.nan

        vU_expected = np.ones(10) * np.nan

        np.testing.assert_array_almost_equal(ve_calcd, VE_expected, decimal=7)
        np.testing.assert_array_almost_equal(vn_calcd, VN_expected, decimal=7)
        np.testing.assert_array_almost_equal(vu_calcd, vU_expected, decimal=7)
Ejemplo n.º 7
0
    def test_vel3dk(self):
        """
        Tests functions vel3dk_east, vel3dk_north, and vel3dk_up
        from the ion_functions.data.vel_functions module using test data
        from the VELPTMN DPS. Tests normal operation, when the beams
        variable does not contain actionable fill values (fill values in
        one of the first 4 columns).

        Implemented by:

        2014-03-06: Stuart Pearce. Initial code, vel3dk_up.
        2013-04-17: Stuart Pearce. Initial code, vel3dk_east and vel3dk_north.
        2013-04-24: Stuart Pearce. Changed to be general for all velocity
                    instruments.
        2014-02-05: Christopher Wingard. Edited to use magnetic corrections in
                    the generic_functions module.
        2015-06-02: Russell Desiderio.
                    (1) Uncommented testing.assert statement for upwards velocity
                        test; set ptch and rll values for this test to those used
                        by the eastward and northward function tests so that the
                        upwards velocity unit test passes.
                    (2) Combined the east and north tests with the up tests into
                        this one function.
                    (3) Changed more of the input variables to Global in preparation
                        for cloning the present routine to add unit tests checking
                        the actions of the DPAs when the beams variable contains
                        fill values (to fix redmine blocker #3178).
        2018-06-19: Russell Desiderio. Changed unit test values to reflect the
                    changes incorporated into the vel3dk DPA algorithm.


        References:

            OOI (2012). Data Product Specification for Mean Point Water
                Velocity. Document Control Number 1341-00790.
                https://alfresco.oceanobservatories.org/ (See: Company Home
                >> OOI >> Controlled >> 1000 System Level >>
                1341-00790_Data_Product_SPEC_VELPTMN_OOI.pdf)

            VEL3D-K IDD (2014) (No DPS as of 2014-03-03)
                https://confluence.oceanobservatories.org/display/
                instruments/VEL3D-K__stc_imodem+-+Telemetered
        """

        beams = np.array([[1, 2, 4, 0, 0], [1, 2, 4, 0, 0], [1, 2, 4, 0, 0],
                          [1, 2, 4, 0, 0], [1, 2, 4, 0, 0], [2, 3, 4, 0, 0],
                          [2, 3, 4, 0, 0], [2, 3, 4, 0, 0], [2, 3, 4, 0, 0],
                          [2, 3, 4, 0, 0]])

        ve_calcd = vel3dk_east(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                               LON, TS, VSCALE, DEPTH)
        vn_calcd = vel3dk_north(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                                LON, TS, VSCALE, DEPTH)
        vu_calcd = vel3dk_up(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, VSCALE)

        VE_expected = np.array([
            0.82249603, -0.22633049, 0.49801448, -0.07904969, 0.38632842,
            0.88336431, -1.84831136, 0.43001174, 0.06043974, 0.41225013
        ])

        VN_expected = np.array([
            0.62296765, 0.21800797, -0.14479311, 0.41739691, -0.47814240,
            -0.75753862, 0.88334724, 0.83473984, -1.82667954, -0.01635351
        ])

        vU_expected = np.array([
            -0.27506406, 0.75059143, 0.58418777, 1.36163388, 0.85850869,
            1.21113768, 0.38492693, -0.66162609, 0.75089539, -1.80239185
        ])

        np.testing.assert_array_almost_equal(ve_calcd, VE_expected, decimal=7)
        np.testing.assert_array_almost_equal(vn_calcd, VN_expected, decimal=7)
        np.testing.assert_array_almost_equal(vu_calcd, vU_expected, decimal=7)
Ejemplo n.º 8
0
    def test_vel3dk(self):
        """
        Tests functions vel3dk_mag_corr_east and vel3dk_mag_corr_north
        from the ion_functions.data.vel_functions module using test data
        from the VELPTMN DPS.

        Implemented by:

        2013-04-17: Stuart Pearce. Initial code.
        2013-04-24: Stuart Pearce. Changed to be general for all velocity
                    instruments.
        2014-02-05: Christopher Wingard. Edited to use magnetic corrections in
                    the generic_functions module.

        References:

            OOI (2012). Data Product Specification for Mean Point Water
                Velocity. Document Control Number 1341-00790.
                https://alfresco.oceanobservatories.org/ (See: Company Home
                >> OOI >> Controlled >> 1000 System Level >>
                1341-00790_Data_Product_SPEC_VELPTMN_OOI.pdf)
        """

        beams = np.array([
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, 0]])

        hdg = 10. * np.array(
            [0., 36., 72., 108., 144., 180., 216., 252., 288., 324.])

        ptch = 10. * np.array([
            -20.10, -5.82, 0.0, -10.26, -8.09, -1.36, 5.33, 9.96, 13.68, 26.77])

        rll = 10. * np.array([
            -15.0, -11.67, -8.33, -5.0, 0.0, 1.67, 5.0, 8.33, 11.67, 15.0])

        vel0 = np.array([
            0, 6305, 6000, 7810, 10048, 11440, -10341, -10597, 9123, -12657])

        vel1 = np.array([
            0, 1050, 856, -1672, 3593, -2487, -5731, -3085, -1987, 2382])

        vel2 = np.array([
            7628, 0, 4974, -4204, 4896, 5937, 6480, -6376, -7271, -7576])

        Vscale = np.array([-4])

        ve_cor = vel3dk_east(
            vel0, vel1, vel2, hdg, ptch, rll, beams, LAT, LON, TS, Vscale, DEPTH)
        vn_cor = vel3dk_north(
            vel0, vel1, vel2, hdg, ptch, rll, beams, LAT, LON, TS, Vscale, DEPTH)

        VE_expected = np.array([
            0.34404501, -0.01039404,  0.64049184, -0.17489265, -0.0739631,
            -1.09305797, -0.47947474,  0.11710443,  1.97369869, -1.6466505])

        VN_expected = np.array([
            0.91742235,  0.04629215,  0.06132321,  0.56597656, -0.35874325,
            0.37553716, -1.87672302, -1.12589293,  0.0720366, -0.6617893])

        np.testing.assert_array_almost_equal(ve_cor, VE_expected, decimal=7)
        np.testing.assert_array_almost_equal(vn_cor, VN_expected, decimal=7)
Ejemplo n.º 9
0
    def test_vel3dk(self):
        """
        Tests functions vel3dk_east, vel3dk_north, and vel3dk_up
        from the ion_functions.data.vel_functions module using test data
        from the VELPTMN DPS. Tests normal operation, when the beams
        variable does not contain actionable fill values (fill values in
        one of the first 4 columns).

        Implemented by:

        2014-03-06: Stuart Pearce. Initial code, vel3dk_up.
        2013-04-17: Stuart Pearce. Initial code, vel3dk_east and vel3dk_north.
        2013-04-24: Stuart Pearce. Changed to be general for all velocity
                    instruments.
        2014-02-05: Christopher Wingard. Edited to use magnetic corrections in
                    the generic_functions module.
        2015-06-02: Russell Desiderio.
                    (1) Uncommented testing.assert statement for upwards velocity
                        test; set ptch and rll values for this test to those used
                        by the eastward and northward function tests so that the
                        upwards velocity unit test passes.
                    (2) Combined the east and north tests with the up tests into
                        this one function.
                    (3) Changed more of the input variables to Global in preparation
                        for cloning the present routine to add unit tests checking
                        the actions of the DPAs when the beams variable contains
                        fill values (to fix redmine blocker #3178).

        References:

            OOI (2012). Data Product Specification for Mean Point Water
                Velocity. Document Control Number 1341-00790.
                https://alfresco.oceanobservatories.org/ (See: Company Home
                >> OOI >> Controlled >> 1000 System Level >>
                1341-00790_Data_Product_SPEC_VELPTMN_OOI.pdf)

            VEL3D-K IDD (2014) (No DPS as of 2014-03-03)
                https://confluence.oceanobservatories.org/display/
                instruments/VEL3D-K__stc_imodem+-+Telemetered
        """

        beams = np.array([[1, 2, 4, 0, 0], [1, 2, 4, 0, 0], [1, 2, 4, 0, 0],
                          [1, 2, 4, 0, 0], [1, 2, 4, 0, 0], [2, 3, 4, 0, 0],
                          [2, 3, 4, 0, 0], [2, 3, 4, 0, 0], [2, 3, 4, 0, 0],
                          [2, 3, 4, 0, 0]])

        ve_calcd = vel3dk_east(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                               LON, TS, VSCALE, DEPTH)
        vn_calcd = vel3dk_north(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT,
                                LON, TS, VSCALE, DEPTH)
        vu_calcd = vel3dk_up(VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, VSCALE)

        VE_expected = np.array([
            0.34404501, -0.01039404, 0.64049184, -0.17489265, -0.0739631,
            -1.09305797, -0.47947474, 0.11710443, 1.97369869, -1.6466505
        ])

        VN_expected = np.array([
            0.91742235, 0.04629215, 0.06132321, 0.56597656, -0.35874325,
            0.37553716, -1.87672302, -1.12589293, 0.0720366, -0.6617893
        ])

        vU_expected = np.array([
            -0.42452079, 0.8123358, 0.443022, 1.29753572, 0.99032304,
            1.21870746, 0.76989652, -0.19519593, -0.05982637, -0.51904823
        ])

        np.testing.assert_array_almost_equal(ve_calcd, VE_expected, decimal=7)
        np.testing.assert_array_almost_equal(vn_calcd, VN_expected, decimal=7)
        np.testing.assert_array_almost_equal(vu_calcd, vU_expected, decimal=7)
Ejemplo n.º 10
0
    def test_vel3dk(self):
        """
        Tests functions vel3dk_east, vel3dk_north, and vel3dk_up
        from the ion_functions.data.vel_functions module using test data
        from the VELPTMN DPS. Tests normal operation, when the beams
        variable does not contain actionable fill values (fill values in
        one of the first 4 columns).

        Implemented by:

        2014-03-06: Stuart Pearce. Initial code, vel3dk_up.
        2013-04-17: Stuart Pearce. Initial code, vel3dk_east and vel3dk_north.
        2013-04-24: Stuart Pearce. Changed to be general for all velocity
                    instruments.
        2014-02-05: Christopher Wingard. Edited to use magnetic corrections in
                    the generic_functions module.
        2015-06-02: Russell Desiderio.
                    (1) Uncommented testing.assert statement for upwards velocity
                        test; set ptch and rll values for this test to those used
                        by the eastward and northward function tests so that the
                        upwards velocity unit test passes.
                    (2) Combined the east and north tests with the up tests into
                        this one function.
                    (3) Changed more of the input variables to Global in preparation
                        for cloning the present routine to add unit tests checking
                        the actions of the DPAs when the beams variable contains
                        fill values (to fix redmine blocker #3178).

        References:

            OOI (2012). Data Product Specification for Mean Point Water
                Velocity. Document Control Number 1341-00790.
                https://alfresco.oceanobservatories.org/ (See: Company Home
                >> OOI >> Controlled >> 1000 System Level >>
                1341-00790_Data_Product_SPEC_VELPTMN_OOI.pdf)

            VEL3D-K IDD (2014) (No DPS as of 2014-03-03)
                https://confluence.oceanobservatories.org/display/
                instruments/VEL3D-K__stc_imodem+-+Telemetered
        """

        beams = np.array([
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [1, 2, 4, 0, 0],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, 0],
            [2, 3, 4, 0, 0]])

        ve_calcd = vel3dk_east(
            VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT, LON, TS, VSCALE, DEPTH)
        vn_calcd = vel3dk_north(
            VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, LAT, LON, TS, VSCALE, DEPTH)
        vu_calcd = vel3dk_up(
            VEL0, VEL1, VEL2, HDG, PTCH, RLL, beams, VSCALE)

        VE_expected = np.array([
            0.34404501, -0.01039404,  0.64049184, -0.17489265, -0.0739631,
            -1.09305797, -0.47947474,  0.11710443,  1.97369869, -1.6466505])

        VN_expected = np.array([
            0.91742235,  0.04629215,  0.06132321,  0.56597656, -0.35874325,
            0.37553716, -1.87672302, -1.12589293,  0.0720366, -0.6617893])

        vU_expected = np.array([
            -0.42452079, 0.8123358, 0.443022, 1.29753572, 0.99032304,
            1.21870746, 0.76989652, -0.19519593, -0.05982637, -0.51904823])

        np.testing.assert_array_almost_equal(ve_calcd, VE_expected, decimal=7)
        np.testing.assert_array_almost_equal(vn_calcd, VN_expected, decimal=7)
        np.testing.assert_array_almost_equal(vu_calcd, vU_expected, decimal=7)