def deepcopy(self, id_modifier):
copy_ptr = libsbol.copyDNAComponent(self.ptr, id_modifier)
copy_uri = self.uri + id_modifier
copy = DNAComponent(self.doc, copy_uri, copy_ptr)
seq_copy_ptr = libsbol.getDNAComponentSequence(copy_ptr)
if seq_copy_ptr:
seq_copy_uri = libsbol.getDNASequenceURI(seq_copy_ptr)
seq_copy = DNASequence(self.doc, seq_copy_uri, ptr=seq_copy_ptr)
for i_ann in range(libsbol.getNumSequenceAnnotationsFor(copy.ptr)):
SA_copy_ptr = libsbol.getNthSequenceAnnotationFor(copy.ptr, i_ann)
SA_copy_uri = libsbol.getSequenceAnnotationURI(SA_copy_ptr)
SA_copy = SequenceAnnotation(self.doc, SA_copy_uri, ptr=SA_copy_ptr)
return copy
def deepcopy(self, id_modifier):
copy_ptr = libsbol.copyDNAComponent(self.ptr, id_modifier)
copy_uri = self.uri + id_modifier
copy = DNAComponent(self.doc, copy_uri, copy_ptr)
seq_copy_ptr = libsbol.getDNAComponentSequence(copy_ptr)
if seq_copy_ptr:
seq_copy_uri = libsbol.getDNASequenceURI(seq_copy_ptr)
seq_copy = DNASequence(self.doc, seq_copy_uri, ptr=seq_copy_ptr)
for i_ann in range(libsbol.getNumSequenceAnnotationsFor(copy.ptr)):
SA_copy_ptr = libsbol.getNthSequenceAnnotationFor(copy.ptr, i_ann)
SA_copy_uri = libsbol.getSequenceAnnotationURI(SA_copy_ptr)
SA_copy = SequenceAnnotation(self.doc,
SA_copy_uri,
ptr=SA_copy_ptr)
return copy
def read(self, filename):
libsbol.readDocument(self.ptr, filename)
# Instantiate python proxy objects for each C object in file
for i in range(0, libsbol.getNumDNASequences(self.ptr)):
ptr = libsbol.getNthDNASequence(self.ptr, i)
uri = libsbol.getDNASequenceURI(ptr)
seq = DNASequence(self, uri, ptr)
for i in range(0, libsbol.getNumSequenceAnnotations(self.ptr)):
ptr = libsbol.getNthSequenceAnnotation(self.ptr, i)
uri = libsbol.getSequenceAnnotationURI(ptr)
seq_annotation = SequenceAnnotation(self, uri, ptr)
for i in range(0, libsbol.getNumDNAComponents(self.ptr)):
ptr = libsbol.getNthDNAComponent(self.ptr, i)
uri = libsbol.getDNAComponentURI(ptr)
component = DNAComponent(self, uri, ptr)
for i in range(0, libsbol.getNumCollections(self.ptr)):
ptr = libsbol.getNthCollection(self.ptr, i)
uri = libsbol.getCollectionURI(ptr)
collection = SequenceAnnotation(self, uri, ptr)
def read(self, filename):
libsbol.readDocument(self.ptr, filename)
# Instantiate python proxy objects for each C object in file
for i in range(0, libsbol.getNumDNASequences(self.ptr)):
ptr = libsbol.getNthDNASequence(self.ptr, i)
uri = libsbol.getDNASequenceURI(ptr)
seq = DNASequence(self, uri, ptr)
for i in range(0, libsbol.getNumSequenceAnnotations(self.ptr)):
ptr = libsbol.getNthSequenceAnnotation(self.ptr, i)
uri = libsbol.getSequenceAnnotationURI(ptr)
seq_annotation = SequenceAnnotation(self, uri, ptr)
for i in range(0, libsbol.getNumDNAComponents(self.ptr)):
ptr = libsbol.getNthDNAComponent(self.ptr, i)
uri = libsbol.getDNAComponentURI(ptr)
component = DNAComponent(self, uri, ptr)
for i in range(0, libsbol.getNumCollections(self.ptr)):
ptr = libsbol.getNthCollection(self.ptr, i)
uri = libsbol.getCollectionURI(ptr)
collection = SequenceAnnotation(self, uri, ptr)
def uri(self):
return libsbol.getDNASequenceURI(self.ptr)
def uri(self):
return libsbol.getDNASequenceURI(self.ptr)