def testTwoDisplays(self):
"""Test that we can do things with two frames"""
exp = afwImage.ExposureF(300, 350)
for frame in (0, 1):
ds9.setMaskTransparency(50, frame=frame)
if frame == 1:
ds9.setMaskPlaneColor("CROSSTALK", "ignore", frame=frame)
ds9.mtv(exp, title="parent", frame=frame)
ds9.erase(frame=frame)
ds9.dot('o', 205, 180, size=6, ctype=ds9.RED, frame=frame)
def _displayDebug(self, kernelCellSet, spatialKernel, spatialBackground):
"""!Provide visualization of the inputs and ouputs to the Psf-matching code
@param kernelCellSet: the SpatialCellSet used in determining the matching kernel and background
@param spatialKernel: spatially varying Psf-matching kernel
@param spatialBackground: spatially varying background-matching function
"""
import lsstDebug
displayCandidates = lsstDebug.Info(__name__).displayCandidates
displayKernelBasis = lsstDebug.Info(__name__).displayKernelBasis
displayKernelMosaic = lsstDebug.Info(__name__).displayKernelMosaic
plotKernelSpatialModel = lsstDebug.Info(__name__).plotKernelSpatialModel
showBadCandidates = lsstDebug.Info(__name__).showBadCandidates
maskTransparency = lsstDebug.Info(__name__).maskTransparency
if not maskTransparency:
maskTransparency = 0
ds9.setMaskTransparency(maskTransparency)
if displayCandidates:
diUtils.showKernelCandidates(kernelCellSet, kernel=spatialKernel, background=spatialBackground,
frame=lsstDebug.frame,
showBadCandidates=showBadCandidates)
lsstDebug.frame += 1
diUtils.showKernelCandidates(kernelCellSet, kernel=spatialKernel, background=spatialBackground,
frame=lsstDebug.frame,
showBadCandidates=showBadCandidates,
kernels=True)
lsstDebug.frame += 1
diUtils.showKernelCandidates(kernelCellSet, kernel=spatialKernel, background=spatialBackground,
frame=lsstDebug.frame,
showBadCandidates=showBadCandidates,
resids=True)
lsstDebug.frame += 1
if displayKernelBasis:
diUtils.showKernelBasis(spatialKernel, frame=lsstDebug.frame)
lsstDebug.frame += 1
if displayKernelMosaic:
diUtils.showKernelMosaic(kernelCellSet.getBBox(), spatialKernel, frame=lsstDebug.frame)
lsstDebug.frame += 1
if plotKernelSpatialModel:
diUtils.plotKernelSpatialModel(spatialKernel, kernelCellSet, showBadCandidates=showBadCandidates)
def displayDipoles(self, exposure, sources):
"""!Display debugging information on the detected dipoles
@param exposure Image the dipoles were measured on
@param sources The set of diaSources that were measured"""
import lsstDebug
display = lsstDebug.Info(__name__).display
displayDiaSources = lsstDebug.Info(__name__).displayDiaSources
maskTransparency = lsstDebug.Info(__name__).maskTransparency
if not maskTransparency:
maskTransparency = 90
ds9.setMaskTransparency(maskTransparency)
ds9.mtv(exposure, frame=lsstDebug.frame)
if display and displayDiaSources:
with ds9.Buffering():
for source in sources:
cenX, cenY = source.get("ipdiffim_DipolePsfFlux_centroid")
if np.isinf(cenX) or np.isinf(cenY):
cenX, cenY = source.getCentroid()
isdipole = source.get("classification.dipole")
if isdipole and np.isfinite(isdipole):
# Dipole
ctype= "green"
else:
# Not dipole
ctype = "red"
ds9.dot("o", cenX, cenY, size=2, ctype=ctype, frame=lsstDebug.frame)
negCenX = source.get("ip_diffim_PsfDipoleFlux_neg_centroid_x")
negCenY = source.get("ip_diffim_PsfDipoleFlux_neg_centroid_y")
posCenX = source.get("ip_diffim_PsfDipoleFlux_pos_centroid_x")
posCenY = source.get("ip_diffim_PsfDipoleFlux_pos_centroid_y")
if (np.isinf(negCenX) or np.isinf(negCenY) or np.isinf(posCenX) or np.isinf(posCenY)):
continue
ds9.line([(negCenX, negCenY), (posCenX, posCenY)], ctype="yellow", frame=lsstDebug.frame)
lsstDebug.frame += 1
def _buildCellSet(self, exposure, referencePsfModel):
"""!Build a SpatialCellSet for use with the solve method
@param exposure: The science exposure that will be convolved; must contain a Psf
@param referencePsfModel: Psf model to match to
@return kernelCellSet: a SpatialCellSet to be used by self._solve
Raise a RuntimeError if the reference Psf model and science Psf model have different dimensions
"""
scienceBBox = exposure.getBBox()
sciencePsfModel = exposure.getPsf()
# The Psf base class does not support getKernel() in general, as there are some Psf
# classes for which this is not meaningful.
# Many Psfs we use in practice are KernelPsfs, and this algorithm will work fine for them,
# but someday it should probably be modified to support arbitrary Psfs.
referencePsfModel = measAlg.KernelPsf.swigConvert(referencePsfModel)
sciencePsfModel = measAlg.KernelPsf.swigConvert(sciencePsfModel)
if referencePsfModel is None or sciencePsfModel is None:
raise RuntimeError("ERROR: Psf matching is only implemented for KernelPsfs")
if (referencePsfModel.getKernel().getDimensions() != sciencePsfModel.getKernel().getDimensions()):
pexLog.Trace(self.log.getName(), 1,
"ERROR: Dimensions of reference Psf and science Psf different; exiting")
raise RuntimeError, "ERROR: Dimensions of reference Psf and science Psf different; exiting"
psfWidth, psfHeight = referencePsfModel.getKernel().getDimensions()
maxKernelSize = min(psfWidth, psfHeight) - 1
if maxKernelSize % 2 == 0:
maxKernelSize -= 1
if self.kConfig.kernelSize > maxKernelSize:
raise ValueError, "Kernel size (%d) too big to match Psfs of size %d; reduce to at least %d" % (
self.kConfig.kernelSize, psfWidth, maxKernelSize)
# Infer spatial order of Psf model!
#
# Infer from the number of spatial parameters.
# (O + 1) * (O + 2) / 2 = N
# O^2 + 3 * O + 2 * (1 - N) = 0
#
# Roots are [-3 +/- sqrt(9 - 8 * (1 - N))] / 2
#
nParameters = sciencePsfModel.getKernel().getNSpatialParameters()
root = num.sqrt(9 - 8 * (1 - nParameters))
if (root != root // 1): # We know its an integer solution
pexLog.Trace(self.log.getName(), 3, "Problem inferring spatial order of image's Psf")
else:
order = (root - 3) / 2
if (order != order // 1):
pexLog.Trace(self.log.getName(), 3, "Problem inferring spatial order of image's Psf")
else:
pexLog.Trace(self.log.getName(), 2, "Spatial order of Psf = %d; matching kernel order = %d" % (
order, self.kConfig.spatialKernelOrder))
regionSizeX, regionSizeY = scienceBBox.getDimensions()
scienceX0, scienceY0 = scienceBBox.getMin()
sizeCellX = self.kConfig.sizeCellX
sizeCellY = self.kConfig.sizeCellY
kernelCellSet = afwMath.SpatialCellSet(
afwGeom.Box2I(afwGeom.Point2I(scienceX0, scienceY0),
afwGeom.Extent2I(regionSizeX, regionSizeY)),
sizeCellX, sizeCellY
)
nCellX = regionSizeX // sizeCellX
nCellY = regionSizeY // sizeCellY
dimenR = referencePsfModel.getKernel().getDimensions()
dimenS = sciencePsfModel.getKernel().getDimensions()
policy = pexConfig.makePolicy(self.kConfig)
for row in range(nCellY):
# place at center of cell
posY = sizeCellY * row + sizeCellY // 2 + scienceY0
for col in range(nCellX):
# place at center of cell
posX = sizeCellX * col + sizeCellX // 2 + scienceX0
pexLog.Trace(self.log.getName(), 5, "Creating Psf candidate at %.1f %.1f" % (posX, posY))
# reference kernel image, at location of science subimage
kernelImageR = referencePsfModel.computeImage(afwGeom.Point2D(posX, posY)).convertF()
kernelMaskR = afwImage.MaskU(dimenR)
kernelMaskR.set(0)
kernelVarR = afwImage.ImageF(dimenR)
kernelVarR.set(1.0)
referenceMI = afwImage.MaskedImageF(kernelImageR, kernelMaskR, kernelVarR)
# kernel image we are going to convolve
kernelImageS = sciencePsfModel.computeImage(afwGeom.Point2D(posX, posY)).convertF()
kernelMaskS = afwImage.MaskU(dimenS)
kernelMaskS.set(0)
kernelVarS = afwImage.ImageF(dimenS)
kernelVarS.set(1.0)
scienceMI = afwImage.MaskedImageF(kernelImageS, kernelMaskS, kernelVarS)
# The image to convolve is the science image, to the reference Psf.
kc = diffimLib.makeKernelCandidate(posX, posY, scienceMI, referenceMI, policy)
kernelCellSet.insertCandidate(kc)
import lsstDebug
display = lsstDebug.Info(__name__).display
displaySpatialCells = lsstDebug.Info(__name__).displaySpatialCells
maskTransparency = lsstDebug.Info(__name__).maskTransparency
if not maskTransparency:
maskTransparency = 0
if display:
ds9.setMaskTransparency(maskTransparency)
if display and displaySpatialCells:
diUtils.showKernelSpatialCells(exposure.getMaskedImage(), kernelCellSet,
symb="o", ctype=ds9.CYAN, ctypeUnused=ds9.YELLOW, ctypeBad=ds9.RED,
size=4, frame=lsstDebug.frame, title="Image to be convolved")
lsstDebug.frame += 1
return kernelCellSet
def runDebug(self, exposure, subtractRes, selectSources, kernelSources, diaSources):
"""@todo Test and update for current debug display and slot names
"""
import lsstDebug
display = lsstDebug.Info(__name__).display
showSubtracted = lsstDebug.Info(__name__).showSubtracted
showPixelResiduals = lsstDebug.Info(__name__).showPixelResiduals
showDiaSources = lsstDebug.Info(__name__).showDiaSources
showDipoles = lsstDebug.Info(__name__).showDipoles
maskTransparency = lsstDebug.Info(__name__).maskTransparency
if display:
import lsst.afw.display.ds9 as ds9
if not maskTransparency:
maskTransparency = 0
ds9.setMaskTransparency(maskTransparency)
if display and showSubtracted:
ds9.mtv(subtractRes.subtractedExposure, frame=lsstDebug.frame, title="Subtracted image")
mi = subtractRes.subtractedExposure.getMaskedImage()
x0, y0 = mi.getX0(), mi.getY0()
with ds9.Buffering():
for s in diaSources:
x, y = s.getX() - x0, s.getY() - y0
ctype = "red" if s.get("flags.negative") else "yellow"
if (s.get("flags.pixel.interpolated.center") or s.get("flags.pixel.saturated.center") or
s.get("flags.pixel.cr.center")):
ptype = "x"
elif (s.get("flags.pixel.interpolated.any") or s.get("flags.pixel.saturated.any") or
s.get("flags.pixel.cr.any")):
ptype = "+"
else:
ptype = "o"
ds9.dot(ptype, x, y, size=4, frame=lsstDebug.frame, ctype=ctype)
lsstDebug.frame += 1
if display and showPixelResiduals and selectSources:
nonKernelSources = []
for source in selectSources:
if not source in kernelSources:
nonKernelSources.append(source)
diUtils.plotPixelResiduals(exposure,
subtractRes.warpedExposure,
subtractRes.subtractedExposure,
subtractRes.kernelCellSet,
subtractRes.psfMatchingKernel,
subtractRes.backgroundModel,
nonKernelSources,
self.subtract.config.kernel.active.detectionConfig,
origVariance=False)
diUtils.plotPixelResiduals(exposure,
subtractRes.warpedExposure,
subtractRes.subtractedExposure,
subtractRes.kernelCellSet,
subtractRes.psfMatchingKernel,
subtractRes.backgroundModel,
nonKernelSources,
self.subtract.config.kernel.active.detectionConfig,
origVariance=True)
if display and showDiaSources:
flagChecker = SourceFlagChecker(diaSources)
isFlagged = [flagChecker(x) for x in diaSources]
isDipole = [x.get("classification.dipole") for x in diaSources]
diUtils.showDiaSources(diaSources, subtractRes.subtractedExposure, isFlagged, isDipole,
frame=lsstDebug.frame)
lsstDebug.frame += 1
if display and showDipoles:
DipoleAnalysis().displayDipoles(subtractRes.subtractedExposure, diaSources,
frame=lsstDebug.frame)
lsstDebug.frame += 1
def testMaskPlanes(self):
"""Test basic image display"""
ds9.setMaskTransparency(50)
ds9.setMaskPlaneColor("CROSSTALK", "orange")
def runDebug(self, exposure, subtractRes, selectSources, kernelSources,
diaSources):
"""@todo Test and update for current debug display and slot names
"""
import lsstDebug
display = lsstDebug.Info(__name__).display
showSubtracted = lsstDebug.Info(__name__).showSubtracted
showPixelResiduals = lsstDebug.Info(__name__).showPixelResiduals
showDiaSources = lsstDebug.Info(__name__).showDiaSources
showDipoles = lsstDebug.Info(__name__).showDipoles
maskTransparency = lsstDebug.Info(__name__).maskTransparency
if display:
import lsst.afw.display.ds9 as ds9
if not maskTransparency:
maskTransparency = 0
ds9.setMaskTransparency(maskTransparency)
if display and showSubtracted:
ds9.mtv(subtractRes.subtractedExposure,
frame=lsstDebug.frame,
title="Subtracted image")
mi = subtractRes.subtractedExposure.getMaskedImage()
x0, y0 = mi.getX0(), mi.getY0()
with ds9.Buffering():
for s in diaSources:
x, y = s.getX() - x0, s.getY() - y0
ctype = "red" if s.get("flags.negative") else "yellow"
if (s.get("flags.pixel.interpolated.center")
or s.get("flags.pixel.saturated.center")
or s.get("flags.pixel.cr.center")):
ptype = "x"
elif (s.get("flags.pixel.interpolated.any")
or s.get("flags.pixel.saturated.any")
or s.get("flags.pixel.cr.any")):
ptype = "+"
else:
ptype = "o"
ds9.dot(ptype,
x,
y,
size=4,
frame=lsstDebug.frame,
ctype=ctype)
lsstDebug.frame += 1
if display and showPixelResiduals and selectSources:
nonKernelSources = []
for source in selectSources:
if not source in kernelSources:
nonKernelSources.append(source)
diUtils.plotPixelResiduals(
exposure,
subtractRes.warpedExposure,
subtractRes.subtractedExposure,
subtractRes.kernelCellSet,
subtractRes.psfMatchingKernel,
subtractRes.backgroundModel,
nonKernelSources,
self.subtract.config.kernel.active.detectionConfig,
origVariance=False)
diUtils.plotPixelResiduals(
exposure,
subtractRes.warpedExposure,
subtractRes.subtractedExposure,
subtractRes.kernelCellSet,
subtractRes.psfMatchingKernel,
subtractRes.backgroundModel,
nonKernelSources,
self.subtract.config.kernel.active.detectionConfig,
origVariance=True)
if display and showDiaSources:
flagChecker = SourceFlagChecker(diaSources)
isFlagged = [flagChecker(x) for x in diaSources]
isDipole = [x.get("classification.dipole") for x in diaSources]
diUtils.showDiaSources(diaSources,
subtractRes.subtractedExposure,
isFlagged,
isDipole,
frame=lsstDebug.frame)
lsstDebug.frame += 1
if display and showDipoles:
DipoleAnalysis().displayDipoles(subtractRes.subtractedExposure,
diaSources,
frame=lsstDebug.frame)
lsstDebug.frame += 1
def testMaskPlanes(self):
"""Test basic image display"""
ds9.setMaskTransparency(50)
ds9.setMaskPlaneColor("CROSSTALK", "orange")
def subtractExposures(self,
templateExposure,
scienceExposure,
templateFwhmPix=None,
scienceFwhmPix=None,
candidateList=None,
doWarping=True,
convolveTemplate=True):
"""!Register, Psf-match and subtract two Exposures
Do the following, in order:
- Warp templateExposure to match scienceExposure, if their WCSs do not already match
- Determine a PSF matching kernel and differential background model
that matches templateExposure to scienceExposure
- PSF-match templateExposure to scienceExposure
- Compute subtracted exposure (see return values for equation).
@param templateExposure: exposure to PSF-match to scienceExposure
@param scienceExposure: reference Exposure
@param templateFwhmPix: FWHM (in pixels) of the Psf in the template image (image to convolve)
@param scienceFwhmPix: FWHM (in pixels) of the Psf in the science image
@param candidateList: a list of footprints/maskedImages for kernel candidates;
if None then source detection is run.
- Currently supported: list of Footprints or measAlg.PsfCandidateF
@param doWarping: what to do if templateExposure's and scienceExposure's WCSs do not match:
- if True then warp templateExposure to match scienceExposure
- if False then raise an Exception
@param convolveTemplate: convolve the template image or the science image
- if True, templateExposure is warped if doWarping, templateExposure is convolved
- if False, templateExposure is warped if doWarping, scienceExposure is convolved
@return a pipeBase.Struct containing these fields:
- subtractedExposure: subtracted Exposure = scienceExposure - (matchedImage + backgroundModel)
- matchedImage: templateExposure after warping to match templateExposure (if doWarping true),
and convolving with psfMatchingKernel
- psfMatchingKernel: PSF matching kernel
- backgroundModel: differential background model
- kernelCellSet: SpatialCellSet used to determine PSF matching kernel
"""
results = self.matchExposures(templateExposure=templateExposure,
scienceExposure=scienceExposure,
templateFwhmPix=templateFwhmPix,
scienceFwhmPix=scienceFwhmPix,
candidateList=candidateList,
doWarping=doWarping,
convolveTemplate=convolveTemplate)
subtractedExposure = afwImage.ExposureF(scienceExposure, True)
if convolveTemplate:
subtractedMaskedImage = subtractedExposure.getMaskedImage()
subtractedMaskedImage -= results.matchedExposure.getMaskedImage()
subtractedMaskedImage -= results.backgroundModel
else:
subtractedExposure.setMaskedImage(
results.warpedExposure.getMaskedImage())
subtractedMaskedImage = subtractedExposure.getMaskedImage()
subtractedMaskedImage -= results.matchedExposure.getMaskedImage()
subtractedMaskedImage -= results.backgroundModel
# Preserve polarity of differences
subtractedMaskedImage *= -1
# Place back on native photometric scale
subtractedMaskedImage /= results.psfMatchingKernel.computeImage(
afwImage.ImageD(results.psfMatchingKernel.getDimensions()),
False)
import lsstDebug
display = lsstDebug.Info(__name__).display
displayDiffIm = lsstDebug.Info(__name__).displayDiffIm
maskTransparency = lsstDebug.Info(__name__).maskTransparency
if not maskTransparency:
maskTransparency = 0
if display:
ds9.setMaskTransparency(maskTransparency)
if display and displayDiffIm:
ds9.mtv(templateExposure, frame=lsstDebug.frame, title="Template")
lsstDebug.frame += 1
ds9.mtv(results.matchedExposure,
frame=lsstDebug.frame,
title="Matched template")
lsstDebug.frame += 1
ds9.mtv(scienceExposure,
frame=lsstDebug.frame,
title="Science Image")
lsstDebug.frame += 1
ds9.mtv(subtractedExposure,
frame=lsstDebug.frame,
title="Difference Image")
lsstDebug.frame += 1
results.subtractedExposure = subtractedExposure
return results
def matchMaskedImages(self,
templateMaskedImage,
scienceMaskedImage,
candidateList,
templateFwhmPix=None,
scienceFwhmPix=None):
"""!PSF-match a MaskedImage (templateMaskedImage) to a reference MaskedImage (scienceMaskedImage)
Do the following, in order:
- Determine a PSF matching kernel and differential background model
that matches templateMaskedImage to scienceMaskedImage
- Convolve templateMaskedImage by the PSF matching kernel
@param templateMaskedImage: masked image to PSF-match to the reference masked image;
must be warped to match the reference masked image
@param scienceMaskedImage: maskedImage whose PSF is to be matched to
@param templateFwhmPix: FWHM (in pixels) of the Psf in the template image (image to convolve)
@param scienceFwhmPix: FWHM (in pixels) of the Psf in the science image
@param candidateList: a list of footprints/maskedImages for kernel candidates;
if None then source detection is run.
- Currently supported: list of Footprints or measAlg.PsfCandidateF
@return a pipeBase.Struct containing these fields:
- psfMatchedMaskedImage: the PSF-matched masked image =
templateMaskedImage convolved with psfMatchingKernel.
This has the same xy0, dimensions and wcs as scienceMaskedImage.
- psfMatchingKernel: the PSF matching kernel
- backgroundModel: differential background model
- kernelCellSet: SpatialCellSet used to solve for the PSF matching kernel
Raise a RuntimeError if input images have different dimensions
"""
import lsstDebug
display = lsstDebug.Info(__name__).display
displayTemplate = lsstDebug.Info(__name__).displayTemplate
displaySciIm = lsstDebug.Info(__name__).displaySciIm
displaySpatialCells = lsstDebug.Info(__name__).displaySpatialCells
maskTransparency = lsstDebug.Info(__name__).maskTransparency
if not maskTransparency:
maskTransparency = 0
if display:
ds9.setMaskTransparency(maskTransparency)
if not candidateList:
raise RuntimeError(
"Candidate list must be populated by makeCandidateList")
if not self._validateSize(templateMaskedImage, scienceMaskedImage):
self.log.error("ERROR: Input images different size")
raise RuntimeError("Input images different size")
if display and displayTemplate:
ds9.mtv(templateMaskedImage,
frame=lsstDebug.frame,
title="Image to convolve")
lsstDebug.frame += 1
if display and displaySciIm:
ds9.mtv(scienceMaskedImage,
frame=lsstDebug.frame,
title="Image to not convolve")
lsstDebug.frame += 1
kernelCellSet = self._buildCellSet(templateMaskedImage,
scienceMaskedImage, candidateList)
if display and displaySpatialCells:
diUtils.showKernelSpatialCells(scienceMaskedImage,
kernelCellSet,
symb="o",
ctype=ds9.CYAN,
ctypeUnused=ds9.YELLOW,
ctypeBad=ds9.RED,
size=4,
frame=lsstDebug.frame,
title="Image to not convolve")
lsstDebug.frame += 1
if templateFwhmPix and scienceFwhmPix:
self.log.info("Matching Psf FWHM %.2f -> %.2f pix",
templateFwhmPix, scienceFwhmPix)
if self.kConfig.useBicForKernelBasis:
tmpKernelCellSet = self._buildCellSet(templateMaskedImage,
scienceMaskedImage,
candidateList)
nbe = diffimTools.NbasisEvaluator(self.kConfig, templateFwhmPix,
scienceFwhmPix)
bicDegrees = nbe(tmpKernelCellSet, self.log)
basisList = makeKernelBasisList(self.kConfig,
templateFwhmPix,
scienceFwhmPix,
alardDegGauss=bicDegrees[0],
metadata=self.metadata)
del tmpKernelCellSet
else:
basisList = makeKernelBasisList(self.kConfig,
templateFwhmPix,
scienceFwhmPix,
metadata=self.metadata)
spatialSolution, psfMatchingKernel, backgroundModel = self._solve(
kernelCellSet, basisList)
psfMatchedMaskedImage = afwImage.MaskedImageF(
templateMaskedImage.getBBox())
doNormalize = False
afwMath.convolve(psfMatchedMaskedImage, templateMaskedImage,
psfMatchingKernel, doNormalize)
return pipeBase.Struct(
matchedImage=psfMatchedMaskedImage,
psfMatchingKernel=psfMatchingKernel,
backgroundModel=backgroundModel,
kernelCellSet=kernelCellSet,
)
def _buildCellSet(self, exposure, referencePsfModel):
"""!Build a SpatialCellSet for use with the solve method
@param exposure: The science exposure that will be convolved; must contain a Psf
@param referencePsfModel: Psf model to match to
@return kernelCellSet: a SpatialCellSet to be used by self._solve
Raise a RuntimeError if the reference Psf model and science Psf model have different dimensions
"""
scienceBBox = exposure.getBBox()
sciencePsfModel = exposure.getPsf()
# The Psf base class does not support getKernel() in general, as there are some Psf
# classes for which this is not meaningful.
# Many Psfs we use in practice are KernelPsfs, and this algorithm will work fine for them,
# but someday it should probably be modified to support arbitrary Psfs.
referencePsfModel = measAlg.KernelPsf.swigConvert(referencePsfModel)
sciencePsfModel = measAlg.KernelPsf.swigConvert(sciencePsfModel)
if referencePsfModel is None or sciencePsfModel is None:
raise RuntimeError(
"ERROR: Psf matching is only implemented for KernelPsfs")
if (referencePsfModel.getKernel().getDimensions() !=
sciencePsfModel.getKernel().getDimensions()):
pexLog.Trace(
self.log.getName(), 1,
"ERROR: Dimensions of reference Psf and science Psf different; exiting"
)
raise RuntimeError, "ERROR: Dimensions of reference Psf and science Psf different; exiting"
psfWidth, psfHeight = referencePsfModel.getKernel().getDimensions()
maxKernelSize = min(psfWidth, psfHeight) - 1
if maxKernelSize % 2 == 0:
maxKernelSize -= 1
if self.kConfig.kernelSize > maxKernelSize:
raise ValueError, "Kernel size (%d) too big to match Psfs of size %d; reduce to at least %d" % (
self.kConfig.kernelSize, psfWidth, maxKernelSize)
# Infer spatial order of Psf model!
#
# Infer from the number of spatial parameters.
# (O + 1) * (O + 2) / 2 = N
# O^2 + 3 * O + 2 * (1 - N) = 0
#
# Roots are [-3 +/- sqrt(9 - 8 * (1 - N))] / 2
#
nParameters = sciencePsfModel.getKernel().getNSpatialParameters()
root = num.sqrt(9 - 8 * (1 - nParameters))
if (root != root // 1): # We know its an integer solution
pexLog.Trace(self.log.getName(), 3,
"Problem inferring spatial order of image's Psf")
else:
order = (root - 3) / 2
if (order != order // 1):
pexLog.Trace(self.log.getName(), 3,
"Problem inferring spatial order of image's Psf")
else:
pexLog.Trace(
self.log.getName(), 2,
"Spatial order of Psf = %d; matching kernel order = %d" %
(order, self.kConfig.spatialKernelOrder))
regionSizeX, regionSizeY = scienceBBox.getDimensions()
scienceX0, scienceY0 = scienceBBox.getMin()
sizeCellX = self.kConfig.sizeCellX
sizeCellY = self.kConfig.sizeCellY
kernelCellSet = afwMath.SpatialCellSet(
afwGeom.Box2I(afwGeom.Point2I(scienceX0, scienceY0),
afwGeom.Extent2I(regionSizeX, regionSizeY)),
sizeCellX, sizeCellY)
nCellX = regionSizeX // sizeCellX
nCellY = regionSizeY // sizeCellY
dimenR = referencePsfModel.getKernel().getDimensions()
dimenS = sciencePsfModel.getKernel().getDimensions()
policy = pexConfig.makePolicy(self.kConfig)
for row in range(nCellY):
# place at center of cell
posY = sizeCellY * row + sizeCellY // 2 + scienceY0
for col in range(nCellX):
# place at center of cell
posX = sizeCellX * col + sizeCellX // 2 + scienceX0
pexLog.Trace(
self.log.getName(), 5,
"Creating Psf candidate at %.1f %.1f" % (posX, posY))
# reference kernel image, at location of science subimage
kernelImageR = referencePsfModel.computeImage(
afwGeom.Point2D(posX, posY)).convertF()
kernelMaskR = afwImage.MaskU(dimenR)
kernelMaskR.set(0)
kernelVarR = afwImage.ImageF(dimenR)
kernelVarR.set(1.0)
referenceMI = afwImage.MaskedImageF(kernelImageR, kernelMaskR,
kernelVarR)
# kernel image we are going to convolve
kernelImageS = sciencePsfModel.computeImage(
afwGeom.Point2D(posX, posY)).convertF()
kernelMaskS = afwImage.MaskU(dimenS)
kernelMaskS.set(0)
kernelVarS = afwImage.ImageF(dimenS)
kernelVarS.set(1.0)
scienceMI = afwImage.MaskedImageF(kernelImageS, kernelMaskS,
kernelVarS)
# The image to convolve is the science image, to the reference Psf.
kc = diffimLib.makeKernelCandidate(posX, posY, scienceMI,
referenceMI, policy)
kernelCellSet.insertCandidate(kc)
import lsstDebug
display = lsstDebug.Info(__name__).display
displaySpatialCells = lsstDebug.Info(__name__).displaySpatialCells
maskTransparency = lsstDebug.Info(__name__).maskTransparency
if not maskTransparency:
maskTransparency = 0
if display:
ds9.setMaskTransparency(maskTransparency)
if display and displaySpatialCells:
diUtils.showKernelSpatialCells(exposure.getMaskedImage(),
kernelCellSet,
symb="o",
ctype=ds9.CYAN,
ctypeUnused=ds9.YELLOW,
ctypeBad=ds9.RED,
size=4,
frame=lsstDebug.frame,
title="Image to be convolved")
lsstDebug.frame += 1
return kernelCellSet