def testInputFile(self):
test_input = ["-c", MISS_KEY_INFO_INI, "-f", FITEVB_OUT]
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertTrue(
"expected comma-separated numerical lower range" in output)
def testSumWOBest(self):
test_input = ["-c", DA_GAUSS_INI, "-s", ORIG_ALL_BEST]
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertTrue(
"specified, which is required with a specified" in output)
def testMissReqParams(self):
test_input = ["-c", MISS_GROUP_NAME, "-f", FITEVB_OUT]
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertTrue(
"In configuration file section 'REP1', missing parameter 'group_names'"
in output)
def testRepExpon2(self):
try:
test_input = ["-c", ARQ_REP_EXPON2_INI, FIT_REP_EXPON2]
main(test_input)
self.assertFalse(
diff_lines(SUB_DIR_DEF_OUT, GOOD_ARQ_REP_EXPON2_OUT))
finally:
silent_remove(SUB_DIR_DEF_OUT, disable=DISABLE_REMOVE)
def testMissingBest(self):
test_input = ["-c", DA_GAUSS_INI, "-f", FITEVB_OUT, "-r"]
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertTrue(
"(16) does not equal the total number of values (15)" in
output)
def testTooManyInFitEVBOut(self):
test_input = ["-c", DA_GAUSS_INI, "-f", FITEVB_OUT_TOO_MANY]
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertTrue(
"(15) does not equal the total number of values (17)" in
output)
def testARQ2Fit(self):
# In the EVB param file, this is option "PT" with "1-asymmetric" (confusing, huh?)
test_input = ["-c", ARQ2_INI, FIT_HIJ, FIT_REP1]
try:
main(test_input)
self.assertFalse(diff_lines(SUB_DIR_DEF_OUT, GOOD_ARQ2_OUT))
finally:
silent_remove(SUB_DIR_DEF_OUT, disable=DISABLE_REMOVE)
def testHelp(self):
test_input = ['-h']
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertFalse(output)
with capture_stdout(main, test_input) as output:
self.assertTrue("optional arguments" in output)
def testWithBest(self):
test_input = [
"-c", DA_GAUSS_INI, "-f", FITEVB_OUT_RESID, "-r", FIT_REP1, FIT_HIJ
]
try:
main(test_input)
self.assertFalse(diff_lines(DEF_OUT, GOOD_NO_VII_FIT_OUT))
finally:
silent_remove(DEF_OUT, disable=DISABLE_REMOVE)
def testNoOffDiagFit(self):
test_input = [
"-c", NO_OFF_DIAG_INI, "-f", NO_OFF_DIAG_FITEVB_OUT, FIT_REP1
]
try:
main(test_input)
self.assertFalse(diff_lines(SUB_DIR_DEF_OUT, GOOD_NO_OFF_DIAG_OUT))
finally:
silent_remove(SUB_DIR_DEF_OUT, disable=DISABLE_REMOVE)
def testMissingParam(self):
test_input = [
"-c",
MISS_PARAM_INI,
"-f",
FITEVB_OUT,
]
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertTrue("missing parameter" in output)
def testCollectBestWResidNoInitialBest(self):
try:
# Ensure that this is not already a summary file
silent_remove(ALL_BEST_STR, disable=DISABLE_REMOVE)
main([
"-c", DA_GAUSS_INI, "-f", FITEVB_OUT1, "-s", ALL_BEST_STR,
"-r", FIT_HIJ, FIT_REP1
])
self.assertFalse(diff_lines(DEF_OUT, GOOD_INP_OUT1))
self.assertFalse(diff_lines(ALL_BEST_STR, GOOD_ALL_BEST_NEW))
finally:
silent_remove(DEF_OUT, disable=DISABLE_REMOVE)
silent_remove(ALL_BEST_STR, disable=DISABLE_REMOVE)
def testCollectBestWResid1(self):
try:
shutil.copyfile(ORIG_ALL_BEST1, ALL_BEST)
main([
"-c", DA_GAUSS_INI, "-f", FITEVB_OUT1, "-s", ALL_BEST, "-r",
FIT_HIJ, FIT_REP1
])
self.assertFalse(diff_lines(DEF_OUT, GOOD_INP_OUT1))
self.assertFalse(diff_lines(ALL_BEST, GOOD_ALL_BEST1))
self.assertFalse(diff_lines(ALL_BEST_CSV, GOOD_ALL_BEST_CSV1))
self.assertFalse(diff_lines(ALL_BEST_DIFF, GOOD_ALL_BEST_DIFF1))
finally:
silent_remove(DEF_OUT, disable=DISABLE_REMOVE)
silent_remove(ALL_BEST, disable=DISABLE_REMOVE)
silent_remove(ALL_BEST_CSV, disable=DISABLE_REMOVE)
silent_remove(ALL_BEST_DIFF, disable=DISABLE_REMOVE)
def testAddSummarySuffix(self):
try:
shutil.copyfile(ORIG_ALL_BEST_ARQ2, ALL_BEST)
main([
"-c", ARQ7_INI, "-f", FITEVB_ARQ2_BEST, "-s", ALL_BEST, "-r",
FIT_REP1, FIT_HIJ
])
self.assertFalse(diff_lines(SUB_DIR_DEF_OUT, GOOD_INP_ARQ7_OUT))
self.assertFalse(diff_lines(ALL_BEST, GOOD_ALL_BEST_ARQ7))
self.assertFalse(
diff_lines(SUB_DATA_ALL_BEST_CSV, GOOD_ALL_BEST_ARQ7_CSV))
# self.assertFalse(diff_lines(SUB_ALL_BEST_DIFF, GOOD_ARQ7_PERC_DIFF))
finally:
silent_remove(SUB_DIR_DEF_OUT, disable=DISABLE_REMOVE)
silent_remove(ALL_BEST, disable=DISABLE_REMOVE)
silent_remove(SUB_DATA_ALL_BEST_CSV, disable=DISABLE_REMOVE)
silent_remove(SUB_ALL_BEST_DIFF, disable=DISABLE_REMOVE)
def testViiFit(self):
try:
fitevb_setup.main(["-c", INI_PATH, "-f", FITEVB_OUTPUT_PATH, "-v", "True"])
self.assertFalse(diff_lines(DEF_OUT_PATH, GOOD_VII_FIT_OUT_PATH))
finally:
silent_remove(DEF_OUT_PATH)
def testWrongSectionIni(self):
test_input = ["-c", WRONG_SECTION_INI, "-f", FITEVB_OUT]
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertTrue("program expects only sections" in output)
def testViiFit(self):
try:
main(["-c", DA_GAUSS_INI, "-f", FITEVB_OUT, FIT_VII])
self.assertFalse(diff_lines(DEF_OUT, GOOD_VII_FIT_OUT))
finally:
silent_remove(DEF_OUT, disable=DISABLE_REMOVE)
def testGhostFile(self):
test_input = ["-c", DA_GAUSS_INI, "-f", GHOST_STR]
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertTrue("Problems reading specified" in output)
def testNoFitEVBOut(self):
try:
main(["-c", DA_GAUSS_INI])
self.assertFalse(diff_lines(DEF_OUT, GOOD_NO_INITIAL_OUT))
finally:
silent_remove(DEF_OUT, disable=DISABLE_REMOVE)
def testExtraParams(self):
test_input = ["-c", MISS_SEC_INI, "-f", FITEVB_OUT]
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertTrue("already exists" in output)
def testGhostDir(self):
test_input = ["-c", BAD_DIR_INI, "-f", FITEVB_OUT]
if logger.isEnabledFor(logging.DEBUG):
main(test_input)
with capture_stderr(main, test_input) as output:
self.assertTrue("Invalid directory" in output)