def test_undying_synapses_added_to_wthsrv_but_not_dthonly(self):
t_cut, Tmax = 10 * second, 100 * second
turnover_data = np.array([[1, 20.85, 0, 0]])
lts_wthsrv, lts_dthonly, _ = extract_lifetimes(turnover_data, 10,
t_cut, Tmax)
self.assertEqual(lts_wthsrv, [Tmax / second - 20.85])
self.assertEqual(lts_dthonly, [])
def test_synpase_first_died_started_but_did_not_die_again(self):
t_cut, Tmax = 10 * second, 100 * second
turnover_data = np.array([[0, 25.85, 0, 0], [1, 32.85, 0, 0]])
lts_wthsrv, lts_dthonly, _ = extract_lifetimes(turnover_data, 10,
t_cut, Tmax)
self.assertEqual(lts_wthsrv, [Tmax / second - 32.85])
self.assertEqual(lts_dthonly, [])
def test_turnover_data_speed(self):
t_split, t_cut, bin_w = 4 * second, 2 * second, 1 * second
turnover_data = np.genfromtxt('test/test_sets/turnover_test_set1',
delimiter=',')
a = time.time()
lts, dts, _ = extract_lifetimes(turnover_data, 1000, t_split, t_cut)
b = time.time()
print('Test Set 1 took :', b - a, ' s')
def test_synases_below_grown_pre_tcut_are_not_inclded(self):
t_cut, Tmax = 10 * second, 100 * second
turnover_data = np.array([[1, 2.85, 0, 0], [0, 7.85, 0, 0],
[0, 0.85, 1, 0], [1, -50.85, 0, 12]])
lts_wthsrv, lts_dthonly, _ = extract_lifetimes(turnover_data, 10,
t_cut, Tmax)
self.assertEqual(lts_wthsrv, [])
self.assertEqual(lts_dthonly, [])
def test_odd_number_growth_death_events(self):
t_cut, Tmax = 10 * second, 100 * second
turnover_data = np.array([[0, 25.85, 0, 0], [1, 32.85, 0, 0],
[0, 38.85, 0, 0], [1, 82.85, 0, 0],
[0, 88.85, 0, 0], [1, 91.02, 0, 0]])
lts_wthsrv, lts_dthonly, _ = extract_lifetimes(turnover_data, 10,
t_cut, Tmax)
np.testing.assert_array_almost_equal(lts_wthsrv, [6., 6., 8.98])
np.testing.assert_array_almost_equal(lts_dthonly, [6., 6.])
def test_even_number_growth_death_events(self):
t_cut, Tmax = 10 * second, 100 * second
turnover_data = np.array([[0, 25.85, 0, 0], [1, 32.85, 0, 0],
[0, 38.85, 0, 0], [1, 82.85, 0, 0],
[0, 88.85, 0, 0]])
lts_wthsrv, lts_dthonly, _ = extract_lifetimes(turnover_data, 10,
t_cut, Tmax)
self.assertEqual(lts_wthsrv, [6., 6.])
self.assertEqual(lts_dthonly, [6., 6.])