Ejemplo n.º 1
0
    def test__children(self):
        params = {'test2': 'y1', 'test3': True}
        evta = EventArray([1.1, 1.5, 1.7] * pq.ms,
                          labels=np.array(
                              ['test event 1', 'test event 2', 'test event 3'],
                              dtype='S'),
                          name='test',
                          description='tester',
                          file_origin='test.file',
                          test1=1,
                          **params)
        evta.annotate(test1=1.1, test0=[1, 2])
        assert_neo_object_is_compliant(evta)

        segment = Segment(name='seg1')
        segment.eventarrays = [evta]
        segment.create_many_to_one_relationship()

        self.assertEqual(evta._single_parent_objects, ('Segment', ))
        self.assertEqual(evta._multi_parent_objects, ())

        self.assertEqual(evta._single_parent_containers, ('segment', ))
        self.assertEqual(evta._multi_parent_containers, ())

        self.assertEqual(evta._parent_objects, ('Segment', ))
        self.assertEqual(evta._parent_containers, ('segment', ))

        self.assertEqual(len(evta.parents), 1)
        self.assertEqual(evta.parents[0].name, 'seg1')

        assert_neo_object_is_compliant(evta)
Ejemplo n.º 2
0
    def test__children(self):
        params = {'test2': 'y1', 'test3': True}
        evta = EventArray([1.1, 1.5, 1.7]*pq.ms,
                          labels=np.array(['test event 1',
                                           'test event 2',
                                           'test event 3'], dtype='S'),
                          name='test', description='tester',
                          file_origin='test.file',
                          test1=1, **params)
        evta.annotate(test1=1.1, test0=[1, 2])
        assert_neo_object_is_compliant(evta)

        segment = Segment(name='seg1')
        segment.eventarrays = [evta]
        segment.create_many_to_one_relationship()

        self.assertEqual(evta._single_parent_objects, ('Segment',))
        self.assertEqual(evta._multi_parent_objects, ())

        self.assertEqual(evta._single_parent_containers, ('segment',))
        self.assertEqual(evta._multi_parent_containers, ())

        self.assertEqual(evta._parent_objects, ('Segment',))
        self.assertEqual(evta._parent_containers, ('segment',))

        self.assertEqual(len(evta.parents), 1)
        self.assertEqual(evta.parents[0].name, 'seg1')

        assert_neo_object_is_compliant(evta)
Ejemplo n.º 3
0
def proc_src_comments(srcfile, filename):
    '''Get the comments in an src file that has been#!N
    processed by the official
    matlab function.  See proc_src for details'''
    comm_seg = Segment(name='Comments', file_origin=filename)
    commentarray = srcfile['comments'].flatten()[0]
    senders = [res[0] for res in commentarray['sender'].flatten()]
    texts = [res[0] for res in commentarray['text'].flatten()]
    timeStamps = [res[0, 0] for res in commentarray['timeStamp'].flatten()]

    timeStamps = np.array(timeStamps, dtype=np.float32)
    t_start = timeStamps.min()
    timeStamps = pq.Quantity(timeStamps - t_start, units=pq.d).rescale(pq.s)
    texts = np.array(texts, dtype='S')
    senders = np.array(senders, dtype='S')
    t_start = brainwaresrcio.convert_brainwaresrc_timestamp(t_start.tolist())

    comments = EventArray(times=timeStamps, labels=texts, senders=senders)
    comm_seg.eventarrays = [comments]
    comm_seg.rec_datetime = t_start

    return comm_seg
def proc_src_comments(srcfile, filename):
    '''Get the comments in an src file that has been#!N
    processed by the official
    matlab function.  See proc_src for details'''
    comm_seg = Segment(name='Comments', file_origin=filename)
    commentarray = srcfile['comments'].flatten()[0]
    senders = [res[0] for res in commentarray['sender'].flatten()]
    texts = [res[0] for res in commentarray['text'].flatten()]
    timeStamps = [res[0, 0] for res in commentarray['timeStamp'].flatten()]

    timeStamps = np.array(timeStamps, dtype=np.float32)
    t_start = timeStamps.min()
    timeStamps = pq.Quantity(timeStamps-t_start, units=pq.d).rescale(pq.s)
    texts = np.array(texts, dtype='S')
    senders = np.array(senders, dtype='S')
    t_start = brainwaresrcio.convert_brainwaresrc_timestamp(t_start.tolist())

    comments = EventArray(times=timeStamps,
                          labels=texts,
                          senders=senders)
    comm_seg.eventarrays = [comments]
    comm_seg.rec_datetime = t_start

    return comm_seg