def test_calc_kinetic_score(self):
'''Tests calc_kinetic_score method.'''
r_rna = 'acctcctta'
calc = RbsCalculator(r_rna, utils)
m_rna = 'TTCTAGAGGGGGGATCTCCCCCCAAAAAATAAGAGGTACACATGACTAAAACTTTCA' + \
'AAGGCTCAGTATTCCCACTGAG'
start_pos = 41
self.assertAlmostEqual(calc.calc_kinetic_score(m_rna, start_pos),
0.528571428571428)
def test_calc_kinetic_score(self):
'''Tests calc_kinetic_score method.'''
r_rna = 'acctcctta'
calc = RbsCalculator(r_rna)
m_rna = 'TTCTAGAGGGGGGATCTCCCCCCAAAAAATAAGAGGTACACATGACTAAAACTTTCA' + \
'AAGGCTCAGTATTCCCACTGAG'
start_pos = 41
self.assertAlmostEqual(calc.calc_kinetic_score(m_rna, start_pos),
0.628571428571)
def test_get_calc_dgs(self):
'''Tests calc_dgs method.'''
r_rna = 'acctcctta'
calc = RbsCalculator(r_rna, utils)
m_rna = 'TTCTAGAGGGGGGATCTCCCCCCAAAAAATAAGAGGTACACATGACTAAAACTTTCA' + \
'AAGGCTCAGTATTCCCACTGAG'
dgs = calc.calc_dgs(m_rna)
self.assertEqual(list(dgs.keys()), [41, 74])
self.assertAlmostEqual(dgs[41][0], -6.088674036389431)
self.assertAlmostEqual(dgs[74][0], 5.793940143051147)
dgs = calc.calc_dgs(m_rna)
self.assertEqual(list(dgs.keys()), [41, 74])
self.assertAlmostEqual(dgs[41][0], -6.088674036389431)
self.assertAlmostEqual(dgs[74][0], 5.793940143051147)
def test_get_calc_dgs(self):
'''Tests calc_dgs method.'''
r_rna = 'acctcctta'
calc = RbsCalculator(r_rna)
m_rna = 'TTCTAGAGGGGGGATCTCCCCCCAAAAAATAAGAGGTACACATGACTAAAACTTTCA' + \
'AAGGCTCAGTATTCCCACTGAG'
dgs = calc.calc_dgs(m_rna)
self.assertEqual(dgs[0], [41, 74])
self.assertAlmostEqual(dgs[1][0], -8.070025836938619)
self.assertAlmostEqual(dgs[1][1], 3.312588580920539)
dgs = calc.calc_dgs(m_rna)
self.assertEqual(dgs[0], [41, 74])
self.assertAlmostEqual(dgs[1][0], -8.070025836938619)
self.assertAlmostEqual(dgs[1][1], 3.312588580920539)
