else:
OutputFileName.append(ScanMeta.get('Name')[j])
FileName.append(ScanMeta.get('Name')[j])
FilePathName.append(currPath)
FileURIName.append(currURI)
#Write = True
#if Write:
if FilePathNameReadable and all(FilePathNameReadable):
print ('cp %s %s' % (FilePathName, writeHCP.DestinationDir))
writeHCP.writeFileFromPath(FilePathName, OutputFileName)
print 'Written bytes: ' + ', '.join(map(str, writeHCP.BytesWrite))
else:
print ('Destination: %s URI: %s' % (OutputDir, FileName))
writeHCP.writeFileFromURL(getHCP, FileURIName, FileName)
print 'Streamed bytes: ' + ', '.join(map(str, writeHCP.BytesStream))
print 'Written bytes: ' + ', '.join(map(str, writeHCP.BytesWrite))
print 'Delta bytes: ' + ', '.join(map(str, list(itertools.imap(operator.sub, writeHCP.BytesStream, writeHCP.BytesWrite))))
print 'Total bytes: %s' % (sum(writeHCP.BytesWrite))
print("Duration: %s" % (time.time() - sTime))
# getSubjectsSessions
# getURLString
#==============================================================================
Projects = getHCP.getProjects()
getHCP.Subject = getHCP.Subjects[0]
getHCP.SubjectSessions = getHCP.getSubjectSessions()
getHCP.Session = getHCP.SubjectSessions.get('Sessions')[0]
getHCP.SessionMeta = getHCP.getSessionMeta()
ScanParms = getHCP.getScanParms()
ScanMeta = getHCP.getScanMeta()
print ScanMeta.get('URIs')[ScanMeta.get('Collections').index('NIFTI')]
writeHCP.writeFileFromURL(getHCP, ScanMeta.get('URIs')[ScanMeta.get('Collections').index('NIFTI')])
if (getHCP.Server.find('intradb') != -1):
AssessorIDs = getHCP.getAssessorIDs( )
AssessorFileURIList = getHCP.getAssessorOutputFile( AssessorIDs )
print getHCP.getProjects()
print getHCP.SessionId, getHCP.getSessionId()
print getHCP.Subjects
print getHCP.getSubjectSessions()
# print getHCP.getFileInfo('https://intradb.humanconnectome.org/data/projects/HCP_Phase2/subjects/192439/experiments/192439_strc/resources/Details/files/StructuralHCP.log')
# print 'Bytes: ' +getHCP.getFileInfo('https://intradb.humanconnectome.org/data/projects/HCP_Phase2/subjects/197550/experiments/197550_diff/resources/Diffusion/files/Diffusion/data/bvals').get('Bytes')
print getHCP.getProjects()
print getHCP.Session
os.path.normpath(OutputDir + os.sep + OutputFile))
OutputFileURIName.append(
os.path.normpath(OutputDir + os.sep + OutputFile))
else:
OutputFileName.append(ScanMeta.get('Name')[j])
FileName.append(ScanMeta.get('Name')[j])
FilePathName.append(currPath)
FileURIName.append(currURI)
#Write = True
#if Write:
if FilePathNameReadable and all(FilePathNameReadable):
print('cp %s %s' % (FilePathName, writeHCP.DestinationDir))
writeHCP.writeFileFromPath(FilePathName, OutputFileName)
print 'Written bytes: ' + ', '.join(map(str, writeHCP.BytesWrite))
else:
print('Destination: %s URI: %s' % (OutputDir, FileName))
writeHCP.writeFileFromURL(getHCP, FileURIName, FileName)
print 'Streamed bytes: ' + ', '.join(map(str, writeHCP.BytesStream))
print 'Written bytes: ' + ', '.join(map(str, writeHCP.BytesWrite))
print 'Delta bytes: ' + ', '.join(
map(
str,
list(
itertools.imap(operator.sub, writeHCP.BytesStream,
writeHCP.BytesWrite))))
print 'Total bytes: %s' % (sum(writeHCP.BytesWrite))
print("Duration: %s" % (time.time() - sTime))
# getSubjectSessions
# getSubjectsSessions
# getURLString
# ==============================================================================
Projects = getHCP.getProjects()
getHCP.Subject = getHCP.Subjects[0]
getHCP.SubjectSessions = getHCP.getSubjectSessions()
getHCP.Session = getHCP.SubjectSessions.get("Sessions")[0]
getHCP.SessionMeta = getHCP.getSessionMeta()
ScanParms = getHCP.getScanParms()
ScanMeta = getHCP.getScanMeta()
print ScanMeta.get("URIs")[ScanMeta.get("Collections").index("NIFTI")]
writeHCP.writeFileFromURL(getHCP, ScanMeta.get("URIs")[ScanMeta.get("Collections").index("NIFTI")])
if getHCP.Server.find("intradb") != -1:
AssessorIDs = getHCP.getAssessorIDs()
AssessorFileURIList = getHCP.getAssessorOutputFile(AssessorIDs)
print getHCP.getProjects()
print getHCP.SessionId, getHCP.getSessionId()
print getHCP.Subjects
print getHCP.getSubjectSessions()
# print getHCP.getFileInfo('https://intradb.humanconnectome.org/data/projects/HCP_Phase2/subjects/192439/experiments/192439_strc/resources/Details/files/StructuralHCP.log')
# print 'Bytes: ' +getHCP.getFileInfo('https://intradb.humanconnectome.org/data/projects/HCP_Phase2/subjects/197550/experiments/197550_diff/resources/Diffusion/files/Diffusion/data/bvals').get('Bytes')
print getHCP.getProjects()
print getHCP.Session