def getBestAlignForImage(self, image, radonimage, reflist, radonreflist,
oldshift):
aligndata = {}
aligndata['bestcc'] = -1.0
for j in range(len(reflist)):
for shiftrad in range(0, self.params['shiftmax'],
self.params['shiftstep']):
radonimage
radonref = radonreflist[j]
radoncc = radermacher.radonshift(radonimage, radonref,
shiftrad)
value = radoncc.argmax()
### FUTURE: use peakfinder to get subpixel peak
col = value % radoncc.shape[1] #rotation angle
row = int(value / radoncc.shape[1]) #shift angle
cc = radoncc[row, col]
#print value, col, row, cc
if cc > aligndata['bestcc']:
### calculate parameters
### FUTURE: get shift list rather than angle list
anglelist = radermacher.getAngles(shiftrad)
shiftangle = anglelist[col]
xshift = shiftrad * math.sin(shiftangle)
yshift = shiftrad * math.cos(shiftangle)
rotangle = row * self.params['stepsize']
### save values
aligndata['bestcc'] = cc
aligndata['xshift'] = math.ceil(xshift)
aligndata['yshift'] = math.ceil(yshift)
aligndata['rotangle'] = rotangle
aligndata['refid'] = j
#print ("ref %02d | %.8f | x %2d y %2d ang %.1f"
# %(aligndata['refid'],aligndata['bestcc'], aligndata['xshift'],
# aligndata['yshift'], aligndata['rotangle']))
if oldshift is not None:
aligndata['xshift'] += oldshift['xshift']
aligndata['yshift'] += oldshift['yshift']
return aligndata
def getBestAlignForImage(self, image, radonimage, reflist, radonreflist, oldshift):
aligndata = {}
aligndata['bestcc'] = -1.0
for j in range(len(reflist)):
for shiftrad in range(0, self.params['shiftmax'], self.params['shiftstep']):
radonimage
radonref = radonreflist[j]
radoncc = radermacher.radonshift(radonimage, radonref, shiftrad)
value = radoncc.argmax()
### FUTURE: use peakfinder to get subpixel peak
col = value % radoncc.shape[1] #rotation angle
row = int(value/radoncc.shape[1]) #shift angle
cc = radoncc[row,col]
#print value, col, row, cc
if cc > aligndata['bestcc']:
### calculate parameters
### FUTURE: get shift list rather than angle list
anglelist = radermacher.getAngles(shiftrad)
shiftangle = anglelist[col]
xshift = shiftrad*math.sin(shiftangle)
yshift = shiftrad*math.cos(shiftangle)
rotangle = row*self.params['stepsize']
### save values
aligndata['bestcc'] = cc
aligndata['xshift'] = math.ceil(xshift)
aligndata['yshift'] = math.ceil(yshift)
aligndata['rotangle'] = rotangle
aligndata['refid'] = j
#print ("ref %02d | %.8f | x %2d y %2d ang %.1f"
# %(aligndata['refid'],aligndata['bestcc'], aligndata['xshift'],
# aligndata['yshift'], aligndata['rotangle']))
if oldshift is not None:
aligndata['xshift'] += oldshift['xshift']
aligndata['yshift'] += oldshift['yshift']
return aligndata
a = createDots(angle=0., noiselevel=noiselevel, shape=shape)
b = createDots(angle=-30., noiselevel=noiselevel, shape=shape, shift=(3,4))
imagefile.arrayToJpeg(a, "imagea.jpg")
imagefile.arrayToJpeg(b, "imageb.jpg")
ar = radonTransform(a, stepsize)
br = radonTransform(b, stepsize)
imagefile.arrayToJpeg(ar, "radona.jpg")
imagefile.arrayToJpeg(br, "radonb.jpg")
#print "%.3f"%(a[1,0])
#print "%.3f"%(b[1,0])
for radius in range(0,11,2):
e = radermacher.radonshift(ar,br,radius)
e = e / (ar.std()*br.std()) # result is not normalized properly
val = e.argmax()
y = val%e.shape[1]
x = int(val/e.shape[1])
anglelist = radermacher.getAngles(radius)
shiftangle = anglelist[y]
xshift = radius*math.sin(shiftangle)
yshift = radius*math.cos(shiftangle)
rotangle = stepsize*x
print "Radius %02d, Max value %.16f at rot=%d, shift=%.1f,%.1f"%(radius, e.max(), rotangle, xshift, yshift)
imagefile.arrayToJpeg(e, "radoncc%02d.jpg"%(radius), msg=False)
print "mem used = %.1f MB"%((mem.used()-u)/1024.)
print "done"
#sys.exit(1)
a = createDots(angle=0., noiselevel=noiselevel, shape=shape) b = createDots(angle=-30., noiselevel=noiselevel, shape=shape, shift=(3,4)) imagefile.arrayToJpeg(a, "imagea.jpg") imagefile.arrayToJpeg(b, "imageb.jpg") ar = radonTransform(a, stepsize) br = radonTransform(b, stepsize) imagefile.arrayToJpeg(ar, "radona.jpg") imagefile.arrayToJpeg(br, "radonb.jpg") #print "%.3f"%(a[1,0]) #print "%.3f"%(b[1,0]) for radius in range(0,11,2): e = radermacher.radonshift(ar,br,radius) e = e / (ar.std()*br.std()) # result is not normalized properly val = e.argmax() y = val%e.shape[1] x = int(val/e.shape[1]) anglelist = radermacher.getAngles(radius) shiftangle = anglelist[y] xshift = radius*math.sin(shiftangle) yshift = radius*math.cos(shiftangle) rotangle = stepsize*x print "Radius %02d, Max value %.16f at rot=%d, shift=%.1f,%.1f"%(radius, e.max(), rotangle, xshift, yshift) imagefile.arrayToJpeg(e, "radoncc%02d.jpg"%(radius), msg=False) print "mem used = %.1f MB"%((mem.used()-u)/1024.) print "done" #sys.exit(1)
