CellProfiler-plugins

A home for community-contributed and experimental CellProfiler modules.

Beginner-level instructions

Clone this repository:

cd PLUGIN_DIRECTORY
git clone https://github.com/CellProfiler/CellProfiler-plugins.git

Configure CellProfiler plugins directory in the GUI via Preferences > CellProfiler plugins directory (you will need to restart CellProfiler for the change to take effect). When running CellProfiler via the command line, use the --plugins-directory flag to specify the plugins directory, for example:
```
cellprofiler --run --run-headless --project PROJECT_FILE --plugins-directory PLUGIN_DIRECTORY
```

Name		Name	Last commit message	Last commit date
Latest commit History 67 Commits
cellprofiler_plugins		cellprofiler_plugins
tests		tests
.gitignore		.gitignore
.travis.yml		.travis.yml
README.md		README.md
activecontourmodel.py		activecontourmodel.py
blobdetection.py		blobdetection.py
edgedetection.py		edgedetection.py
exporttocellh5.py		exporttocellh5.py
gammacorrection.py		gammacorrection.py
histogramequalization.py		histogramequalization.py
imagegradient.py		imagegradient.py
laplacianofgaussian.py		laplacianofgaussian.py
measure_population_context.py		measure_population_context.py
measureimagefocus.py		measureimagefocus.py
measureimagefocus_README.md		measureimagefocus_README.md
measureimagefocus_requirements.txt		measureimagefocus_requirements.txt
measureradialentropy.py		measureradialentropy.py
measuretrackquality.py		measuretrackquality.py
medialaxis.py		medialaxis.py
mergeobjects.py		mergeobjects.py
randomwalkeralgorithm.py		randomwalkeralgorithm.py
tophattransform.py		tophattransform.py