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vanilla_rnn.py
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vanilla_rnn.py
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import pickle
import json
import os
import math
import torch
import numpy as np
import matplotlib.pyplot as plt
from torch.nn.utils.rnn import pad_packed_sequence, PackedSequence, pack_padded_sequence
from torch.hub import download_url_to_file
import torch.utils.data
# pip install nltk
import nltk
from nltk.tokenize import sent_tokenize, word_tokenize, RegexpTokenizer
from nltk.corpus import stopwords
# nltk.download('stopwords')
stop_words = stopwords.words('english')
# print(stop_words)
# nltk.download() #downlaod punkt manualy
BATCH_SIZE = 64
EPOCHS = 500
LEARNING_RATE = 1e-3
RNN_INPUT_SIZE = 256
RNN_HIDDEN_SIZE = 256 # 512
RNN_LAYERS = 1
RNN_DROPOUT = 0.3
PACKING = False # True
run_path = ''
DEVICE = 'cpu'
if torch.cuda.is_available():
DEVICE = 'cuda'
MIN_SENTENCE_LEN = 3
MAX_SENTENCE_LEN = 20
MAX_LEN = 200 # 200 # limit max number of samples otherwise too slow training (on GPU use all samples / for final training)
if DEVICE == 'cuda':
MAX_LEN = 10000
PATH_DATA = './data'
os.makedirs('./results', exist_ok=True)
os.makedirs(PATH_DATA, exist_ok=True)
# class DatasetCustom(torch.utils.data.Dataset):
# def __init__(self):
# # if not os.path.exists(f'{PATH_DATA}/recipes_raw_nosource_epi.json'):
# # download_url_to_file('https://www.yellowrobot.xyz/share/recipes_raw_nosource_epi.json', progress=True)
# # doesn't work
# # download_url_to_file('https://www.kaggle.com/akmittal/quotes-dataset/download',
# # dst=f'{PATH_DATA}/a.zip', progress=True)
# # with open(f'{PATH_DATA}/recipes_raw_nosource_epi.json') as fp:
# # data_json = json.load(fp)
# with open(f'{PATH_DATA}/quotes.json', encoding="utf-8") as fp:
# data_json = json.load(fp)
#
# self.sentences = []
# self.lengths = [] # lengths of all sentences
# self.words_to_idxes = {}
# self.words_counts = {}
# self.idxes_to_words = {}
#
# for quote_obj in data_json:
# quote = quote_obj['Quote']
# sentences = sent_tokenize(quote)
# for sentence in sentences:
# # split sentence into words and make them lowercase
# words = str.split(sentence.lower())
# # remove punctuation only at the end of word - e.x. "don't'" -> "don't"
# words = [w[:-1] if str.isalpha(w[-1]) is False else w for w in words]
# # filter out stop words
# words = [w for w in words if w not in stop_words]
# # filter one character tokens
# words = [w for w in words if len(w) > 1]
# # remove bad words i'm, i've, .., 10,00 (just didn't overcomplicate with other processing)
# words = [w for w in words if w not in ["i'm", "i've", "..", "10,00"]]
#
# if len(words) > MAX_SENTENCE_LEN:
# words = words[:MAX_SENTENCE_LEN]
# if len(words) < MIN_SENTENCE_LEN:
# continue
# sentence_tokens = []
# for word in words:
# if word not in self.words_to_idxes:
# self.words_to_idxes[word] = len(self.words_to_idxes)
# self.idxes_to_words[self.words_to_idxes[word]] = word
# self.words_counts[word] = 0
# self.words_counts[word] += 1
# sentence_tokens.append(self.words_to_idxes[word])
# self.sentences.append(sentence_tokens)
# self.lengths.append(len(sentence_tokens))
# if MAX_LEN is not None and len(self.sentences) > MAX_LEN:
# break
#
# # after checking freq dist removed characters
# words_freq = dict(sorted(self.words_counts.items(), key=lambda item: item[1]))
# n = 40
# words = list(words_freq.keys())[-n:]
# vals = list(words_freq.values())[-n:]
# plt.barh(words, vals)
# plt.show()
# # sum(vals) = 375 now, before it was 1122
#
# self.max_length = np.max(self.lengths) + 1 # longest sentence length + 1
# self.end_token = '[END]'
# self.words_to_idxes[self.end_token] = len(self.words_to_idxes)
# self.idxes_to_words[self.words_to_idxes[self.end_token]] = self.end_token
# self.words_counts[self.end_token] = len(self.sentences)
#
# self.max_classes_tokens = len(self.words_to_idxes) # unique words amount
#
# word_counts = np.array(list(self.words_counts.values()))
# self.weights = (1.0 / word_counts) * np.sum(word_counts) * 0.5 # more frequent word == smaller weight
#
# print(f'self.sentences: {len(self.sentences)}')
# print(f'self.max_length: {self.max_length}')
# print(f'self.max_classes_tokens: {self.max_classes_tokens}')
#
# print('Example sentences:')
# samples = np.random.choice(self.sentences, 5)
# for each in samples:
# print(' '.join([self.idxes_to_words[it] for it in each]))
#
# def __len__(self):
# return len(self.sentences)
#
# def __getitem__(self, idx):
# # data - abcdef
# # x - abcde<end>
# # y - bcdef<end>
#
# np_x_idxes = np.array(self.sentences[idx][:-1] + [self.words_to_idxes[self.end_token]])
# np_x_padded = np.zeros((self.max_length, self.max_classes_tokens))
# np_x_padded[np.arange(len(np_x_idxes)), np_x_idxes] = 1.0
#
# np_y_idxes = np.array(self.sentences[idx][1:] + [self.words_to_idxes[self.end_token]])
# np_y_padded = np.zeros((self.max_length, self.max_classes_tokens))
# np_y_padded[np.arange(len(np_y_idxes)), np_y_idxes] = 1.0
#
# np_length = self.lengths[idx]
#
# # print([self.idxes_to_words[idx] for idx in np_x_idxes])
# # print([self.idxes_to_words[idx] for idx in np_y_idxes])
# return np_x_padded, np_y_padded, np_length
# # zero seed will result on having always same random split
# torch.manual_seed(0)
# dataset_full = DatasetCustom()
# dataset_train, dataset_test = torch.utils.data.random_split(
# dataset_full, lengths=[int(len(dataset_full) * 0.8), len(dataset_full) - int(len(dataset_full) * 0.8)])
# torch.seed()
#
# data_loader_train = torch.utils.data.DataLoader(
# dataset=dataset_train,
# batch_size=BATCH_SIZE,
# shuffle=True
# )
# data_loader_test = torch.utils.data.DataLoader(
# dataset=dataset_test,
# batch_size=BATCH_SIZE,
# shuffle=False
# )
# TAKEN FROM TRANSFORMER.PY
class DatasetCustom(torch.utils.data.Dataset):
def __init__(self):
self.sentences = []
self.lengths = []
self.words_to_idxes = {}
self.words_counts = {}
self.idxes_to_words = {}
self.max_length = 0
self.end_token = '[END]'
self.max_classes_tokens = len(self.words_to_idxes)
self.weights = 0
def __len__(self):
if MAX_LEN:
return MAX_LEN
return len(self.sentences)
def __getitem__(self, idx):
np_x_idxes = np.array(self.sentences[idx] + [self.words_to_idxes[self.end_token]])
np_x_padded = np.zeros((self.max_length, self.max_classes_tokens))
np_x_padded[np.arange(len(np_x_idxes)), np_x_idxes] = 1.0
np_y_padded = np.roll(np_x_padded, shift=-1, axis=0)
np_length = self.lengths[idx]
return np_x_padded, np_y_padded, np_length
if not os.path.exists(f'{PATH_DATA}/dataset_full.pt'):
download_url_to_file('http://www.yellowrobot.xyz/share/dataset_full.pt', f'{PATH_DATA}/dataset_full.pt',
progress=True)
with open(f'{PATH_DATA}/dataset_full.pt', 'rb') as fp:
dataset_full = pickle.load(fp)
torch.manual_seed(0)
dataset_train, dataset_test = torch.utils.data.random_split(
dataset_full, lengths=[int(len(dataset_full) * 0.8), len(dataset_full) - int(len(dataset_full) * 0.8)])
torch.seed()
data_loader_train = torch.utils.data.DataLoader(
dataset=dataset_train,
batch_size=BATCH_SIZE,
shuffle=True
)
data_loader_test = torch.utils.data.DataLoader(
dataset=dataset_train,
batch_size=BATCH_SIZE,
shuffle=False
)
########################################################################################
class GRUCell(torch.nn.Module):
# https://towardsdatascience.com/illustrated-guide-to-lstms-and-gru-s-a-step-by-step-explanation-44e9eb85bf21
# update gate z_t - what information to store and what to throw away (using sigmoid 0..1 output)
# reset gate r_t - how much of past information to forget
def __init__(self, input_size, hidden_size):
super().__init__()
self.input_size = input_size
self.hidden_size = hidden_size
stdv = 1 / math.sqrt(hidden_size)
self.W_i_r = torch.nn.Parameter(torch.FloatTensor(hidden_size, input_size).uniform_(-stdv, stdv))
self.b_i_r = torch.nn.Parameter(torch.FloatTensor(hidden_size).zero_())
self.W_h_r = torch.nn.Parameter(torch.FloatTensor(hidden_size, hidden_size).uniform_(-stdv, stdv))
self.b_h_r = torch.nn.Parameter(torch.FloatTensor(hidden_size).zero_())
self.W_i_z = torch.nn.Parameter(torch.FloatTensor(hidden_size, input_size).uniform_(-stdv, stdv))
self.b_i_z = torch.nn.Parameter(torch.FloatTensor(hidden_size).zero_())
self.W_h_z = torch.nn.Parameter(torch.FloatTensor(hidden_size, hidden_size).uniform_(-stdv, stdv))
self.b_h_z = torch.nn.Parameter(torch.FloatTensor(hidden_size).zero_())
self.W_i_n = torch.nn.Parameter(torch.FloatTensor(hidden_size, input_size).uniform_(-stdv, stdv))
self.b_i_n = torch.nn.Parameter(torch.FloatTensor(hidden_size).zero_())
self.W_h_n = torch.nn.Parameter(torch.FloatTensor(hidden_size, hidden_size).uniform_(-stdv, stdv))
self.b_h_n = torch.nn.Parameter(torch.FloatTensor(hidden_size).zero_())
# https://pytorch.org/docs/stable/generated/torch.nn.GRU.html
# TODO: why n_t is multiplied by (1 - z_t), but h_t-1 by z_t
def forward(self, x: PackedSequence, hidden=None):
# x.data.shape => (x.batch_sizes.sum(), input_size) => (Pack_batch_1 + ... + Pack_batch_Seq, input_size)
# x.batch_sizes.shape => (Seq)
# x_unpacked.size() => (B, Seq, input_size)
x_unpacked, lengths = pad_packed_sequence(x, batch_first=True)
# hidden == h_t-1
h_out = []
# hidden.size() => (B, self.hidden_size)
if hidden is None:
hidden = torch.FloatTensor(x_unpacked.size(0), self.hidden_size).zero_().to(DEVICE) # (B, H)
x_seq = x_unpacked.permute(1, 0, 2) # => (Seq, B, input_size)
for x_t in x_seq:
# x_t.size() => (B, input_size)
# W_i_r_mul_x = (_, hid, in) x (B, in, 1) => (B, hid, 1).unsqueeze => (B, hid)
W_i_r_mul_x = (self.W_i_r @ x_t.unsqueeze(dim=-1)).squeeze(dim=-1)
# W_h_r_mul_h = (_, hid, hid) x (B, hid, 1) => (B, hid, 1).unsqueeze => (B, hid)
W_h_r_mul_h = (self.W_h_r @ hidden.unsqueeze(dim=-1)).squeeze(dim=-1)
r_t = torch.sigmoid(W_i_r_mul_x + self.b_i_r + W_h_r_mul_h + self.b_h_r)
W_i_z_mul_x = (self.W_i_z @ x_t.unsqueeze(dim=-1)).squeeze(dim=-1)
W_h_z_mul_h = (self.W_h_z @ hidden.unsqueeze(dim=-1)).squeeze(dim=-1)
z_t = torch.sigmoid(W_i_z_mul_x + self.b_i_z + W_h_z_mul_h + self.b_h_z)
W_i_n_mul_x = (self.W_i_n @ x_t.unsqueeze(dim=-1)).squeeze(dim=-1)
W_h_n_mul_h = (self.W_h_n @ hidden.unsqueeze(dim=-1)).squeeze(dim=-1)
n_t = torch.tanh(W_i_n_mul_x + self.b_i_n + r_t * (W_h_n_mul_h + self.b_h_n)) # * - hadamard product
hidden = (1 - z_t) * n_t + z_t * hidden
h_out.append(hidden)
t_h_out = torch.stack(h_out) # => (Seq, B, hidden_size)
t_h_out = t_h_out.permute(1, 0, 2) # => (B, Seq, hidden_size)
t_h_packed = pack_padded_sequence(t_h_out, lengths, batch_first=True)
return t_h_packed
class RNNCell(torch.nn.Module):
def __init__(self, input_size, hidden_size):
super().__init__()
self.input_size = input_size
self.hidden_size = hidden_size
stdv = 1 / math.sqrt(hidden_size)
self.W_x = torch.nn.Parameter(torch.FloatTensor(hidden_size, input_size).uniform_(-stdv, stdv))
self.W_h = torch.nn.Parameter(torch.FloatTensor(hidden_size, hidden_size).uniform_(-stdv, stdv))
self.b = torch.nn.Parameter(torch.FloatTensor(hidden_size).zero_())
def forward(self, x: PackedSequence, hidden=None):
# x.data.shape => (x.batch_sizes.sum(), input_size) => (Pack_batch_1 + ... + Pack_batch_Seq, input_size)
# x.batch_sizes.shape => (Seq)
def calc_hidden(xx_t, h):
# h.size() => always (B, hidden_size)
# xx_t.size() => (B, input_size) | (PackB, input_size)
# W_x.size() => (hidden_size, input_size)
# W_mul_x = (_, hid, in) x (B, in, 1) => (B, hid, 1).unsqueeze => (B, hid)
W_mul_x = (self.W_x @ xx_t.unsqueeze(dim=-1)).squeeze(dim=-1)
W_mul_h = (self.W_h @ h.unsqueeze(dim=-1)).squeeze(dim=-1)
# if PACKING is True and W_mul_x.shape[0] != W_mul_h.shape[0]:
# # either trim h before W_mul_h and bias, cause t+1 and later results we don't need
# # or pad with zeros W_mul_x
# empty_tensor = torch.zeros(W_mul_h.shape)
# empty_tensor[:W_mul_x.shape[0]] = W_mul_x
# W_mul_x = empty_tensor
return torch.tanh(W_mul_x + W_mul_h + self.b)
h_out = []
# convert from optimal seq data layout to zero padded version
x_unpacked, lengths = pad_packed_sequence(x, batch_first=True)
batch_size = x_unpacked.size(0)
if hidden is None:
hidden = torch.FloatTensor(batch_size, self.hidden_size).zero_().to(DEVICE) # (B, H)
# x_unpacked.size() => (B, Seq, input_size)
if PACKING is False:
x_seq = x_unpacked.permute(1, 0, 2) # => (Seq, B, input_size)
for x_t in x_seq:
hidden = calc_hidden(x_t, hidden)
h_out.append(hidden)
# else:
# # iterate packed seqs
# prev_pbatch = 0
# for pbatch in list(x.batch_sizes.numpy()):
# next_pbatch = prev_pbatch + pbatch
# x_t = x.data[prev_pbatch:next_pbatch]
# prev_pbatch = next_pbatch
# hidden = calc_hidden(x_t, hidden)
# h_out.append(hidden)
t_h_out = torch.stack(h_out) # => (Seq, B, hidden_size)
t_h_out = t_h_out.permute(1, 0, 2) # => (B, Seq, hidden_size)
t_h_packed = pack_padded_sequence(t_h_out, lengths, batch_first=True)
return t_h_packed
class Model(torch.nn.Module):
def __init__(self):
super().__init__()
self.embeddings = torch.nn.Embedding(
num_embeddings=dataset_full.max_classes_tokens,
embedding_dim=RNN_INPUT_SIZE
)
# GRU
layers = [GRUCell(
input_size=RNN_INPUT_SIZE,
hidden_size=RNN_HIDDEN_SIZE
)]
# # RNN input cell
# layers = [RNNCell(
# input_size=RNN_INPUT_SIZE,
# hidden_size=RNN_HIDDEN_SIZE
# )]
# # RNN internall cells
# for _ in range(RNN_LAYERS - 2):
# layers.append(RNNCell(
# input_size=RNN_HIDDEN_SIZE,
# hidden_size=RNN_HIDDEN_SIZE
# ))
# # RNN output sell
# layers.append(RNNCell(
# input_size=RNN_HIDDEN_SIZE,
# hidden_size=RNN_INPUT_SIZE
# ))
self.rnn = torch.nn.Sequential(*layers)
def forward(self, x: PackedSequence, hidden=None):
# x.shape (B, Seq, Classes_of_words) => x.shape (B, Seq) every sample is idx of class
# PackedSequence x.data.shape = (All non-empty tokens, Hot-encoded)
x_idxes = x.data.argmax(dim=1) # get idx of each token
embs = self.embeddings.forward(x_idxes) # each token has z embedding vector of size 256
embs_seq = PackedSequence(
data=embs,
batch_sizes=x.batch_sizes,
sorted_indices=x.sorted_indices
)
hidden = self.rnn.forward(embs_seq)
y_prim_logits = hidden.data @ self.embeddings.weight.t()
# y_prim_logits.shape = (B*Seq, F)
y_prim = torch.softmax(y_prim_logits, dim=1)
y_prim_packed = PackedSequence(
data=y_prim,
batch_sizes=x.batch_sizes,
sorted_indices=x.sorted_indices
)
return y_prim_packed
model = Model()
model = model.to(DEVICE)
optimizer = torch.optim.RMSprop(model.parameters(), lr=1e-4)
metrics = {}
best_test_loss = float('Inf')
for stage in ['train', 'test']:
for metric in [
'loss',
'acc'
]:
metrics[f'{stage}_{metric}'] = []
for epoch in range(1, EPOCHS + 1):
for data_loader in [data_loader_train, data_loader_test]:
metrics_epoch = {key: [] for key in metrics.keys()}
stage = 'train'
if data_loader == data_loader_test:
stage = 'test'
for x, y, lengths in data_loader:
x = x.float().to(DEVICE)
y = y.float().to(DEVICE)
idxes = torch.argsort(lengths, descending=True)
lengths = lengths[idxes]
max_len = int(lengths.max())
# sort sentences by length desc and slice
# in x last word is either empty or 'END', and in y it is shifted first word)
x = x[idxes, :max_len]
y = y[idxes, :max_len]
x_packed = pack_padded_sequence(x, lengths, batch_first=True)
y_packed = pack_padded_sequence(y, lengths, batch_first=True)
y_prim_packed = model.forward(x_packed)
weights = torch.from_numpy(dataset_full.weights[torch.argmax(y_packed.data, dim=1).cpu().numpy()])
weights = weights.unsqueeze(dim=1).to(DEVICE)
loss = -torch.mean(weights * y_packed.data * torch.log(y_prim_packed.data + 1e-8))
metrics_epoch[f'{stage}_loss'].append(loss.item()) # Tensor(0.1) => 0.1f
if data_loader == data_loader_train:
loss.backward()
optimizer.step()
optimizer.zero_grad()
np_y_prim = y_prim_packed.data.cpu().data.numpy()
np_y = y_packed.data.cpu().data.numpy()
idx_y = np.argmax(np_y, axis=1)
idx_y_prim = np.argmax(np_y_prim, axis=1)
acc = np.average((idx_y == idx_y_prim) * 1.0)
metrics_epoch[f'{stage}_acc'].append(acc)
metrics_strs = []
for key in metrics_epoch.keys():
if stage in key:
value = np.mean(metrics_epoch[key])
metrics[key].append(value)
metrics_strs.append(f'{key}: {round(value, 2)}')
print(f'epoch: {epoch} {" ".join(metrics_strs)}')
# validation
if data_loader == data_loader_test:
y_prim_unpacked, lengths_unpacked = pad_packed_sequence(y_prim_packed.cpu(), batch_first=True)
y_prim_unpacked = y_prim_unpacked[0]
x = x[0]
y = y[0]
y_prim_idxes = np.argmax(y_prim_unpacked[:lengths_unpacked[0]].cpu().data.numpy(), axis=1).tolist()
x_idxes = np.argmax(x[:lengths_unpacked[0]].cpu().data.numpy(), axis=1).tolist()
y_idxes = np.argmax(y[:lengths_unpacked[0]].cpu().data.numpy(), axis=1).tolist()
print('Validation:')
print('x: ' + ' '.join([dataset_full.idxes_to_words[it] for it in x_idxes]))
print('y: ' + ' '.join([dataset_full.idxes_to_words[it] for it in y_idxes]))
print('y_prim: ' + ' '.join([dataset_full.idxes_to_words[it] for it in y_prim_idxes]))
print(' ')
if best_test_loss > loss.item():
best_test_loss = loss.item()
torch.save(model.cpu().state_dict(), f'./results/model-{epoch}.pt')
model = model.to(DEVICE)
plt.figure(figsize=(12, 5))
plts = []
c = 0
for key, value in metrics.items():
plts += plt.plot(value, f'C{c}', label=key)
ax = plt.twinx()
c += 1
plt.legend(plts, [it.get_label() for it in plts])
plt.savefig(f'./results/epoch-{epoch}.png')
plt.show()
"""
# # filter punctions
# words = RegexpTokenizer(r'\w+').tokenize(sentence.lower())
# e.x. 'Don\'t cry because it\'s over, smile because it happened.'
# 1. RegexpTokenizer(r'\w+').tokenize(s)
# ['Don', 't', 'cry', 'because', 'it', 's', 'over', 'smile', 'because', 'it', 'happened']
# 2. words = word_tokenize(sentence.lower()) -> words=[word.lower() for word in words if word.isalpha()]
# ['do', "n't", 'cry', 'because', 'it', "'s", 'over', ',', 'smile', 'because', 'it', 'happened', '.']
# ['do', 'cry', 'because', 'it', 'over', 'smile', 'because', 'it', 'happened']
"""