Tick the Multi-Template-Matching AND IJ-OpenCV update site of the Fiji udpater.
A new entry will show up in the Plugin Menu (all the way down) after restarting Fiji.
Template matching is an algorithm that can be used for object-detections in images.
The algorithm computes the probability to find one (or several) template images provided by the user.
See the wiki section for the documentation.
You can find a similar implementation in:
If you use this implementation for your research, please cite:
Thomas, L.S.V., Gehrig, J. Multi-template matching: a versatile tool for object-localization in microscopy images.
BMC Bioinformatics 21, 44 (2020). https://doi.org/10.1186/s12859-020-3363-7
This plugin is using OpenCV in Fiji thanks to IJ-OpenCV.
see also:
Domínguez, César, Jónathan Heras, and Vico Pascual. "IJ-OpenCV: Combining ImageJ and OpenCV for processing images in biomedicine." Computers in biology and medicine 84 (2017): 189-194.
The content of this wiki (including illustrations and videos) is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
As a derived work of IJ-OpenCV, the source codes are licensed under GPL-3.
This work has been part of the PhD project of Laurent Thomas under supervision of Dr. Jochen Gehrig at ACQUIFER.
This project has received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No 721537 ImageInLife.
Dataset available on Zenodo
Image courtesy Jakob Gierten (COS, Heidelberg)
Dataset available on Zenodo
