Undergraduate Honours Project

Investigating the use of support vector machines with a Kolmogorov complexity kernel to perform classification for certain problems in bioinformatics.

Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
NC_000913.gbk		NC_000913.gbk
README.md		README.md
build_binding_protein_data.py		build_binding_protein_data.py
build_operon_data.py		build_operon_data.py
build_operon_dictionary.py		build_operon_dictionary.py
build_synthetic_data.py		build_synthetic_data.py
calc_dist.py		calc_dist.py
dataset_negative.fasta		dataset_negative.fasta
dataset_positive.fasta		dataset_positive.fasta
format_sample_data.py		format_sample_data.py
generate_operon_data.py		generate_operon_data.py
generate_operon_sample.py		generate_operon_sample.py
gram_matrix.py		gram_matrix.py
kc.py		kc.py
kfold_binding_protein_data.py		kfold_binding_protein_data.py
kfold_cross_validation.py		kfold_cross_validation.py
kfold_operon_data.py		kfold_operon_data.py
kfold_simple_data.py		kfold_simple_data.py
kfold_synthetic_data.py		kfold_synthetic_data.py
known_operons.csv		known_operons.csv
lzw.py		lzw.py
parse_file.py		parse_file.py
parse_genbank.py		parse_genbank.py
plot_roc.py		plot_roc.py
roc.py		roc.py
roc_binding_protein.py		roc_binding_protein.py
roc_operons.py		roc_operons.py
test_kc_values.py		test_kc_values.py
test_kernel_matrix_prediction.py		test_kernel_matrix_prediction.py
test_large_synthetic_data.py		test_large_synthetic_data.py
test_lzw.py		test_lzw.py
word_generator.py		word_generator.py

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