Initial code pulled from http://mlwave.com/kaggle-connectomics-python-benchmark-code/
To produce predictions with AUC calculated, open a command line prompt and run:
python model.py [fluorescence data] [network positions] [true network configuration]
python model.py ../data/fluorescence_iNet1_Size100_CC01inh.txt ../data/networkPositions_iNet1_Size100_CC03inh.txt ../data/network_iNet1_Size100_CC01inh.txt
python model.py ../data/normal-4/fluorescence_normal-4.txt ../data/normal-4/networkPositions_normal-4.txt ../data/normal-4/network_normal-4.txt
To produce predictions without AUC, simply remove the last command line argument.