The following ImageJ plugins are available:

• cilia_sizes.py - Measure primary cilia from confocal images using WEKA and particle analysis
• fluo_count.py - Fluorescent cell counting using WEKA and particle analysis
• get_sizes.py - Find maximum width of electron microscopy subject at all angles (via rotating calipers method)
• weka_percentage.py - Get percentages of each WEKA classified portion of an image

1. From the "Plugins" menu, selection "Install..."
2. Select the script
3. Accept the default installation directory
4. Restart ImageJ/FIJI
5. The plugin will be available to run from the "Plugins" menu