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A cloud-based infrastructure for managing, analyzing and sharing genomics datasets.
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WhiteLab/Bionimbus-LIMS
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This is the entire bionimbus distribution. You can check it out from git directly into the applicaitons folder of web2py and run. The only package that needs to be installed is the XLRD module for python to allow the generation of keys based on spreadsheets. XLRD can be downloaded from: http://pypi.python.org/pypi/xlrd The package as deployed uses local login and a stabdalone SQLITE database that needs no configutation. In the base directory of the application there is a config.txt file for setting that allow you to use a postgres database, or an openid-based login system. In both cases, there is a line in the config script you will need to configure to point to the local database, or your API key for the janrain openid system. If you have an existing bioinformatics database, there is a sample import script for importing samples and experiments into the system, also in the applications folder.
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A cloud-based infrastructure for managing, analyzing and sharing genomics datasets.
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