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Graphs

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A library for graph-based learning in Python.

Provides several types of graph container objects, with a unified API for visualization, analysis, transformation, and embedding.

Usage example

from graphs.generators import random_graph

G = random_graph([2,3,1,3,2,1,2])

print G.num_vertices()  # 7
print G.num_edges()     # 14

G.symmetrize(method='max')
X = G.isomap(num_dims=2)

G.plot(X, title='isomap embedding')()

Requirements

Requires recent versions of:

  • numpy
  • scipy
  • scikit-learn
  • matplotlib
  • Cython

Optional dependencies:

  • python-igraph
  • graphtool
  • networkx

Testing requires:

  • nose
  • nose-cov

Run the test suite:

./run_tests.sh