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.gitignore

.gitignore

 
 

KmerSupplier.py

KmerSupplier.py

 
 

LICENSE

LICENSE

 
 

README.md

README.md

 
 

SketchMer.py

SketchMer.py

 
 

countLeastSquares.py

countLeastSquares.py

 
 

countminsketch.py

countminsketch.py

 
 

evaluate_accuracies.py

evaluate_accuracies.py

 
 

exact_kmer_count.py

exact_kmer_count.py

 
 

generate_countminsketch_output.py

generate_countminsketch_output.py

 
 

generate_test_dataset.py

generate_test_dataset.py

 
 

readme.txt

readme.txt

 
 

readutil.py

readutil.py

 
 

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sketch-mer

Space-efficient and more accurate k-mer counting for genomics.

We will be making use of Count-Min Sketch, a probabilistic data-structure for this purpose.

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