TODO

git clone https://github.com/arthurdehgan/meegnet.git
cd meegnet
pip install -r requirements.txt
pip install .

The package will be added to pipy in the future (removing the need to clone the repo)

We recommend creating a fresh python environment in order to use this packages scrips:

VENV_PATH="/path/to/environment/"
python -m venv $VENV_PATH\meegnet
source $VENV_PATH\meegnet/bin/activate

Once the environment is created and activated, it is possible to install as instructed in the previous section.

WIP

This script is intended to work for the camcan MEG dataset with maxfilter and transform to default common space (mf_transdef) data in BIDS format.

The Camcan dataset is not open access and you need to send a request on the websitde in order to get access (https://camcan-archive.mrc-cbu.cam.ac.uk/dataaccess/).

This script assumes a copy of the cc700 and dataman folders to a data path parsed through the argparser.