bibliography:biblio.bib

There are data I used during my last year of PhD.

In new git repo (git bare repo too)

git annex init

Data are on TIMC-BCM-15 and krakenator.

For more details see: https://git-annex.branchable.com/walkthrough/

git remote add krakenator krakenator.imag.fr:/home/cayek/Project/Data2016_2017

git annex add file_name

git annex copy --to krakenator

git annex sync krakenator
git annex get file_name

Some informations about dataset in this repo

Dataset simulated by Katie Lotterhos for the school SSMPG2015

Dataset used in Genome scan methods against more complex models: when and how much should we trust them? of piere de villemereuil et al.

.csv into .RData

Python script that generated dataset

I find this in an older .Rmd in my first LFMM project of 2016

outlier = c(546) # for monogenic

I find this in an older .Rmd in my first LFMM project of 2016

outlier = c(2793,1850,583,4083,3349,860,4785,706,947,939,1819,925,403,2867,2897,97,3102,2618,708,1190,2471,1533,3924,2395,2690,2926,1511,668,4826,4755,638,4148,1777,1869,2252,4326,397,3416,3171,2451,1233,2055,3013,3202,1055,3484,2984,2145,4547,4831) + 1

• Data download from: http://bergelson.uchicago.edu/?page_id=790
• download the data

There are data I used in TESS3 second article

Phase 3 version of the 1000 genome, only the chromosom 22. I ddl the vcf file here ddl file:

curl -O ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ALL.chr22.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz
curl -O ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/integrated_call_samples_v3.20130502.ALL.panel

Données trouvé ici: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42861 Utilisé dans ce papier cite:Rahmani_2016.

C’est le fichier qu’olivier a utilisé pour pour ddl les données. Ca marche pas chez moi…

C’est les variables defs dans file:./GSE42861/script_methylome.R. Output par olivier.

En faite je vais pas me prendre la tête :D

data found here: https://github.com/cozygene/refactor. There are data used in the demo of refractor method.

Hgdp data used in cite:frichot13_testin_assoc_between_loci_envir anylisis. I I found this dataset on patator.imag.fr.