NIDM Results Viewer
- parses peak coordinates and associated brain maps
- interactive coordinate browsing
- save image to file (export)
- produces html code for embedding, or local viewer
- uses font brain for nidm and brain imaging icons
Complete documentation is available
To install
pip install git+git://github.com/vsoch/nidmviewer.git
see an example
When installing with setup.py, an executable, nidmviewer is installed in your bin to view nidm files on the fly:
nidmviewer fsl/nidm.ttl
You can see the basic usage by typing the command:
nidmviewer
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
nidmviewer: error: too few arguments
usage: nidmviewer [-h] [--columns_to_remove COLUMNS_TO_REMOVE] ttl base
command line or server tool to view or compare nidm results.
positional arguments:
ttl List of comma separated ttl files to parse.
base base image (standard brain map) to use for the viewer
background.
optional arguments:
-h, --help show this help message and exit
--columns_to_remove COLUMNS_TO_REMOVE
Comma separated list of columns to remove from viewer.
Please submit bugs, comments, and feedback as PRs. This application has not been rigorously tested. Thanks!
Papaya Viewer, we salute you!
- plotting
- please submit feedback and requests