The Core's web dashboard including a faceted file browser
This iteration of the File Browser uses the web API from https://github.com/BD2KGenomics/dcc-dashboard-service
Follow the directions on https://github.com/BD2KGenomics/dcc-dashboard-service.
Create a local host
Follow the directions on https://github.com/BD2KGenomics/dcc-dashboard-service.
Virtual environment and dependencies:
virtualenv env
source env/bin/activate
pip install --upgrade pip
pip install -r ./requirements.txt
See http://bitwiser.in/2015/09/09/add-google-login-in-flask.html
Within an interactive python session:
from app import db
db.create_all()
from werkzeug.serving import make_ssl_devcert
make_ssl_devcert('./ssl', host='localhost')
Environment variables needed:
# dcc-dashboard
export GOOGLE_CLIENT_ID=<FILLMEIN>
export GOOGLE_CLIENT_SECRET=<FILLMEIN>
export REDWOOD_ADMIN=<FILLMEIN>
export REDWOOD_ADMIN_PASSWORD=<FILLMEIN>
export REDWOOD_SERVER=storage.ucsc-cgl.org
export REDWOOD_ADMIN_PORT=8443
export DCC_DASHBOARD_HOST=localhost
export DCC_DASHBOARD_PORT=5000
export DCC_DASHBOARD_PROTOCOL=https
Run it:
python run.py
Note: This assumes you have already installed the web-service and Apache. See https://github.com/BD2KGenomics/dcc-dashboard-service for instructions on how to do this. Then come back here and follow the instructions below.
Clone the repository in the root directory, by doing:
git clone https://github.com/BD2KGenomics/dcc-dashboard.git
Make the soft link:
sudo ln -sT ~/dcc-dashboard-service /var/www/html/dcc-dashboard
Go to the /etc/apache2/sites-enabled/000-default.conf file and add DocumentRoot /var/www/html/dcc-dashboard under ServerAdmin webmaster@localhost, like this:
<VirtualHost *:80>
#Change as appropriate
ServerName your-server-name.com
Header set Access-Control-Allow-Origin "*"
#Change as appropriate
ServerAdmin webmaster@localhost
DocumentRoot /var/www/html/dcc-dashboard
WSGIDaemonProcess dcc-dashboard-service threads=5
WSGIScriptAlias /api/v1 /var/www/html/dcc-dashboard-service/dcc-dashboard-service.wsgi
<Directory dcc-dashboard-service>
WSGIProcessGroup dcc-dashboard-service
WSGIApplicationGroup %{GLOBAL}
Order deny,allow
Allow from all
</Directory>
ErrorLog ${APACHE_LOG_DIR}/error.log
CustomLog ${APACHE_LOG_DIR}/access.log combined
</VirtualHost>
Restart the apache server by doing:
sudo apachectl restart