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influenzanet european db scripts

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InfluenzaNet European Database

This repo will contain script and base data used to create local version of european-level InfluenzaNet DB

Requirements:

  • Python >= 2.6 & < 3
  • bash
  • PostgreSQL 9.1

To create initial data files:

  • R >= 3.2 (+ reshape2 & dplyr)

How it works

  • Run all scripts in bin/ from the top directory (all path are relative to this top dir).
  • local/ dir will contain local specific scripts and local data (dumps to import) and is not under revision For example bin/post-import command, will look for a "local/post-import" script to hold post-import processing only needed for the local db.

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