cxrodgers/ns5_process
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This repository contains a variety of objects all revolving around filling OpenElectrophy databases with raw data from ns5 files, and then interacting with those databases. Main Files (primary purpose: creating and interacting with OE) KlustaKwikIO : dumps spike times to KK format, should be put into OE/neo RecordingSession : reads and writes from folder with all the data car_subtract : preps data for spike sorting, should go into RecordingSession ns5 : handles reading from ns5 file plot_avg_lfp : add to RecordingSession spiketime_dump : add to RecordingSession Main file (make OE not required): SpikeTrainContainers : holds spike trains, should use Picker for this SpikeTrainEnsemble : holds spike trains Expt-specific ugliness (should go into a different repo just for me) RecordingSessionMaker : makes well-formed RecordingSessions, handles the peculiarities of my experiments. add_btrial_numbers : adds btrial numbers, should be split into RecordingSession and RecordingSessionMaker bcontrol : loads my data from bcontrol matfiles check_audio_waveforms : checks alignment AudioTools - detecting audio onsets Deprecated DataSession - Contains BehavingSyncer for syncing timestamps from behavior and neural, should go into RecordingSessionMaker NeuralDataGrabber - Became RecordingSessionMaker SU_make_psth - Became SpikeTrainContainers and SpikeTrainEnsemble generate_timestamps - Added to RecordingSessionMaker
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Scripts to convert ns5 files to OpenElectrophy db, then process
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