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mdl_Xcept232.py
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mdl_Xcept232.py
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#!/usr/bin/env python
# coding: utf-8
#%%
# %load_ext autoreload
# %autoreload 2
import matplotlib
import matplotlib.pyplot as plt
import time
from datetime import datetime
import numpy as np
import tensorflow as tf
from tensorflow.keras.preprocessing.image import ImageDataGenerator
from sklearn.preprocessing import LabelEncoder
from mdl_adapter_layers import mdl_adapter_layers
import os
from RegularizeModel import RegularizeModel
from SaveModelDescript import SaveModelDescript
from ModelEditor import ModelEditor
from get_CompileParams import get_CompileParams
from callback_ConfMat import callback_ConfMat
from callback_PredWriter import callback_PredWriter
import pathlib
import pandas as pd
from Dataset_from_Dataframe import Dataset_from_Dataframe
from Dataset_from_Cache import Dataset_from_Cache
import pickle
os.environ["CUDA_DEVICE_ORDER"]="PCI_BUS_ID"
os.environ["CUDA_VISIBLE_DEVICES"]="2"
#%% Defining paths, loading dataframes and identifying classes
MasterPath = pathlib.Path("/gpfs0/home/jokhun/Pro 1/U2OS small mol screening")
# MasterPath = os.path.abspath('//deptnas.nus.edu.sg/BIE/MBELab/jokhun/Pro 1/U2OS small mol screening')
original_img_shape = (232,232,5)
Img_dir = str(MasterPath.joinpath('im_BigFields(232,232)_5Ch'))
Dataset_dir = MasterPath.joinpath('Datasets_BigFields_5Ch')
DataFrame_Tr_path = Dataset_dir.joinpath('DF_10cls_(232,232)_Tr.csv.xz')
DataFrame_Val_path = Dataset_dir.joinpath('DF_10cls_(232,232)_Val.csv.xz')
DataFrame_Ts_path = Dataset_dir.joinpath('DF_10cls_(232,232)_Ts.csv.xz')
DataFrame_Tr = pd.read_csv(DataFrame_Tr_path)
DataFrame_Val = pd.read_csv(DataFrame_Val_path)
DataFrame_Ts = pd.read_csv(DataFrame_Ts_path)
Classes_Tr = pd.DataFrame([os.path.dirname(Class)[2:-4] for Class in DataFrame_Tr['rel_path']],columns=['Classes'])
Classes_Val = pd.DataFrame([os.path.dirname(Class)[2:-4] for Class in DataFrame_Val['rel_path']],columns=['Classes'])
Classes_Ts = pd.DataFrame([os.path.dirname(Class)[2:-4] for Class in DataFrame_Ts['rel_path']],columns=['Classes'])
print ('Training, validation and test dataframes loaded!')
print (f'Train, Val and Test dataset sizes:\n {DataFrame_Tr.shape[0]}, {DataFrame_Val.shape[0]}, {DataFrame_Ts.shape[0]}')
#%% Encoding labels and adding it to the respective dataframes
ResponseEncoder = LabelEncoder()
ResponseEncoder.fit(Classes_Tr['Classes'].append(Classes_Val['Classes']).append(Classes_Ts['Classes']))
class_names = ResponseEncoder.classes_
NumOfClasses = len(class_names)
print('Number of classes in the data: '+str(NumOfClasses))
DataFrame_Tr = pd.concat([DataFrame_Tr['rel_path'],\
pd.DataFrame(ResponseEncoder.transform(Classes_Tr['Classes']),columns=['label'])\
],axis=1)
DataFrame_Val = pd.concat([DataFrame_Val['rel_path'],\
pd.DataFrame(ResponseEncoder.transform(Classes_Val['Classes']),columns=['label'])\
],axis=1)
DataFrame_Ts = pd.concat([DataFrame_Ts['rel_path'],\
pd.DataFrame(ResponseEncoder.transform(Classes_Ts['Classes']),columns=['label'])\
],axis=1)
print('\n1st rel_path of DataFrame_Tr:',DataFrame_Tr['rel_path'][0])
print('1st Class of Training dataframe:',Classes_Tr['Classes'][0])
print('1st label of DataFrame_Tr:',DataFrame_Tr['label'][0])
print('Decoded class from 1st label of DataFrame_Tr:',\
ResponseEncoder.inverse_transform([DataFrame_Tr['label'][0]])[0])
#%% Instantiating datasets from dataframes
batch_size = 64
shuffle_buffer_size = np.max([batch_size,NumOfClasses])*2
load_from_cache = True
print('batch_size =',batch_size)
print(f'No. of training steps: {np.int(np.ceil(DataFrame_Tr.shape[0]/batch_size))}')
print(f'No. of Validation steps: {np.int(np.ceil(DataFrame_Val.shape[0]/batch_size))}')
print(f'No. of test steps: {np.int(np.ceil(DataFrame_Ts.shape[0]/batch_size))}')
if load_from_cache:
Dataset_Tr = Dataset_from_Cache(cache_path=str(Dataset_dir.joinpath(f"{os.path.basename(DataFrame_Tr_path).split('.')[0]}_Cached")),\
img_shape=original_img_shape, batch_size=batch_size,\
shuffle=True, shuffle_buffer_size=shuffle_buffer_size, load_on_RAM=True)
Dataset_Val = Dataset_from_Cache(cache_path=str(Dataset_dir.joinpath(f"{os.path.basename(DataFrame_Val_path).split('.')[0]}_Cached")),\
img_shape=original_img_shape, batch_size=batch_size,\
shuffle=False, shuffle_buffer_size=shuffle_buffer_size, load_on_RAM=True)
# Dataset_Ts = Dataset_from_Cache(cache_path=str(MasterPath.joinpath('temp_datasets',DataFrame_Ts_path.parts[-1])),\
# img_shape=original_img_shape, batch_size=batch_size,\
# shuffle=False, shuffle_buffer_size=shuffle_buffer_size, load_on_RAM=True)
print('Datasets created!')
else:
cache_file = datetime.now().strftime("%Y%m%d-%H%M%S.%f")
print('cache_time:',cache_file)
Dataset_Tr = Dataset_from_Dataframe(dataframe=DataFrame_Tr,Img_dir=Img_dir,\
batch_size=batch_size,shuffle=True,shuffle_buffer_size=shuffle_buffer_size,\
cache_path=str(MasterPath.joinpath(f'TmpCache{cache_file}Tr')))
Dataset_Val = Dataset_from_Dataframe(dataframe=DataFrame_Val,Img_dir=Img_dir,\
batch_size=batch_size,shuffle=False,shuffle_buffer_size=shuffle_buffer_size,\
cache_path=str(MasterPath.joinpath(f'TmpCache{cache_file}Val')))
# Dataset_Ts = Dataset_from_Dataframe(dataframe=DataFrame_Ts,Img_dir=Img_dir,\
# batch_size=batch_size,shuffle=False,shuffle_buffer_size=shuffle_buffer_size,\
# cache_path=str(MasterPath.joinpath(f'TmpCache{cache_file}Ts')))
print('Datasets created!')
#%% Displaying sample images from each dataset
show_few_img = False
Num_of_sample = 10
if show_few_img:
pos = 0
for count, dataset in enumerate([Dataset_Tr,Dataset_Val,Dataset_Ts]):
for (X,Y) in dataset.take(1):
for num in range(Num_of_sample):
pos += 1
x=X[num,:,:,0]; y=Y[num]
plt.subplot(3,Num_of_sample,pos).set_title(f"{['Train','Val','Test'][count]}: {y}")
plt.imshow(x, cmap='gray', norm=matplotlib.colors.Normalize())
#%% Instantiating keras model
UseExistingArchitectureCores = True
models = {}
keras_preprocess_layers = {}
if UseExistingArchitectureCores:
models['mdl_Xception_232'] = tf.keras.applications.Xception(include_top=False, weights="imagenet", input_shape=(232, 232, 3)) #input_shape=(71, 71, 3)
keras_preprocess_layers['mdl_Xception_232'] = tf.keras.applications.xception.preprocess_input
# models['InceptionV3'] = tf.keras.applications.InceptionV3(include_top=False, weights="imagenet", input_shape=(75, 75, 3)) #input_shape=(75, 75, 3)
# keras_preprocess_layers['InceptionV3'] = tf.keras.applications.inception_v3.preprocess_input
# models['InceptionResNetV2_TransLrn'] = tf.keras.applications.InceptionResNetV2(include_top=False, weights="imagenet", input_shape=(75, 75, 3)) #input_shape=(75, 75, 3)
# keras_preprocess_layers['InceptionResNetV2_TransLrn'] = tf.keras.applications.inception_resnet_v2.preprocess_input
# models['ResNet50V2'] = tf.keras.applications.ResNet50V2(include_top=False, weights="imagenet", input_shape=(64, 64, 3)) #input_shape=(64, 64, 3)
# keras_preprocess_layers['ResNet50V2'] = tf.keras.applications.resnet_v2.preprocess_input
# models['DenseNet201'] = tf.keras.applications.DenseNet201(include_top=False, weights="imagenet", input_shape=(64, 64, 3)) #input_shape=(64, 64, 3)
# keras_preprocess_layers['DenseNet201'] = tf.keras.applications.densenet.preprocess_input
# models['NASNetLarge'] = tf.keras.applications.NASNetLarge(include_top=False, weights=None, input_shape=(64, 64, 3)) #input_shape=(64, 64, 3). NasNetLarge has to be trained from scratch since it doesn't support transfer learning unless the input_shape is (331, 331, 3).
# keras_preprocess_layers['NASNetLarge'] = tf.keras.applications.nasnet.preprocess_input
ModelKeys=list(models.keys())
ModelsCreated = len(ModelKeys)
print (str(ModelsCreated),' model/s loaded!')
else:
print ('No model created. Load one from disk below!')
#%% Saving model description
SaveModelDescription = False
if SaveModelDescription:
for ModelKey in ModelKeys:
model = models[ModelKey]
Model_Path = os.path.join(MasterPath,str(ModelKey))
SaveModelDescript(model, save_dir=Model_Path,
save_filename=str(ModelKey))
print ('Model descriptions saved!')
#%% Editing the core model
Edit_Core_Model = False
# SaveEditedModelDescription = True
# ModelKey = ModelKeys[0]
if Edit_Core_Model:
model = models[ModelKey]
New_Layers={'drop1':tf.keras.layers.Dropout(rate=0.1, name='drop1'),
'drop2':tf.keras.layers.Dropout(rate=0.2, name='drop2'),
'drop3':tf.keras.layers.Dropout(rate=0.3, name='drop3'),
'drop4':tf.keras.layers.Dropout(rate=0.4, name='drop4'),
'drop5':tf.keras.layers.Dropout(rate=0.5, name='drop5'),
}
IncomingLinks_2Axe=[-18, -12, -14, -8, -5, -1]
IncomingLinks_2Forge=[(New_Layers['drop1'], model.layers[-19]),
(model.layers[-18], New_Layers['drop1']),
(model.layers[-12], New_Layers['drop1']),
(New_Layers['drop2'], model.layers[-15]),
(model.layers[-14], New_Layers['drop2']),
(New_Layers['drop3'], model.layers[-9]),
(model.layers[-8], New_Layers['drop3']),
(New_Layers['drop4'], model.layers[-6]),
(model.layers[-5], New_Layers['drop4']),
(New_Layers['drop5'], model.layers[-2]),
(model.layers[-1], New_Layers['drop5']),
]
model_inputs=None
model_outputs=None
model = ModelEditor(model, New_Layers=New_Layers, IncomingLinks_2Axe=IncomingLinks_2Axe,
IncomingLinks_2Forge=IncomingLinks_2Forge,
model_inputs=model_inputs, model_outputs=model_outputs)
models[ModelKey] = model
# Save edited model description
if SaveEditedModelDescription:
Model_Path = os.path.join(MasterPath,str(ModelKey))
SaveModelDescript(model, save_dir=Model_Path,
save_filename=str(ModelKey+'_edited'))
print ('Model descriptions saved!')
#%% Adding Top and Bottom layers to keras models instantiated above
AddTopAndBottomLayers = True
regularizer = tf.keras.regularizers.l1_l2(l1=0, l2=0.001)
original_img_shape = original_img_shape #(w, h, No._of_Ch)
if AddTopAndBottomLayers:
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
core = models[ModelKey]
core.trainable = False
In = tf.keras.Input(shape=original_img_shape, name="Preprocess_Input")
adapter_layers = mdl_adapter_layers (Output_ImgShape=core.input_shape[1:])
core_preprocess_layers = keras_preprocess_layers[ModelKey]
Out = core_preprocess_layers(adapter_layers.Int_Rescaler(name='Ch_rescale_0_255_2')(\
adapter_layers.Ch_Adjuster(kernel_regularizer=regularizer, name='Ch_adjuster')(adapter_layers.Int_Rescaler(name='Ch_rescale_0_255_1')(\
adapter_layers.Im_Rotater(name='random_rotate')(\
adapter_layers.Im_Flipper(name='random_flip_HnV')(In))))))
# Out = core_preprocess_layers(adapter_layers.Int_Rescaler(name='Ch_rescale_0_255_2')(\
# adapter_layers.Ch_Adjuster(name='Ch_adjuster')(adapter_layers.Int_Rescaler(name='Ch_rescale_0_255_1')(\
# adapter_layers.Im_Resizer(name='im_resize')(adapter_layers.Im_Rotater(name='random_rotate')(\
# adapter_layers.Im_Flipper(name='random_flip_HnV')(In)))))))
mdl_preprocess = tf.keras.Model(inputs=In, outputs=Out, name='mdl_preprocess')
In = tf.keras.Input(shape=core.output_shape[1:4], name="Features")
GlbMaxPool = tf.keras.layers.GlobalMaxPool2D(name="GlbMaxPool")
GlbAvgPool = tf.keras.layers.GlobalAveragePooling2D(name="GlbAvgPool")
MaxAvgConcat = tf.keras.layers.Concatenate(axis=-1, name="MaxAvgConcat")
Dropout1 = tf.keras.layers.Dropout(0.5, name="Feature_Dropout")
Dense1 = tf.keras.layers.Dense(units=core.output_shape[-1], activation='relu', kernel_regularizer=regularizer, name="dense1")
Dropout2 = tf.keras.layers.Dropout(0.5, name="Dropout2")
predictions = tf.keras.layers.Dense(units=NumOfClasses, activation=None, kernel_regularizer=regularizer, name="predictions")
Out=predictions(Dropout2(Dense1(Dropout1(MaxAvgConcat([GlbMaxPool(In),GlbAvgPool(In)])))))
mdl_prediction = tf.keras.Model(inputs=In, outputs=Out, name='mdl_prediction')
In = tf.keras.Input(shape=original_img_shape, name="Input_images")
Out = mdl_prediction(core(mdl_preprocess(In)))
models[ModelKey] = tf.keras.Model(inputs=In, outputs=Out, name=ModelKey)
print ('Bottom and Top layers added!')
#%% Saving model description
SaveModelDescription = True
if SaveModelDescription:
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
model = models[ModelKey]
Model_Path = os.path.join(MasterPath,str(ModelKey))
SaveModelDescript(model, save_dir=Model_Path,
save_filename=str(ModelKey))
print ('Model descriptions saved!')
#%% Compiling the models
CompileModels = False
if CompileModels:
ModelKeys = list(models.keys())
for ModelKey in ModelKeys:
model = models[ModelKey]
model.compile(optimizer='adam',
loss=tf.keras.losses.SparseCategoricalCrossentropy(from_logits=True),
metrics=['accuracy'])
print ('Models compiled!')
#%% Loading models from disk
LoadModelFromDisk = False
if LoadModelFromDisk:
models['mdl_name'] = tf.keras.models.load_model('mdl_path')
ModelsLoaded = len(models.keys()) - ModelsCreated
print (str(ModelsLoaded),' models loaded from disk!')
else: print ('No model loaded from disk!')
#%% Adding Regularization to all regularizable layers
RegularizeTheModel = False
if RegularizeTheModel:
regularizer = tf.keras.regularizers.l1_l2(l1=0, l2=0.001)
for ModelKey in ModelKeys:
models[ModelKey]=RegularizeModel(models[ModelKey], regularizer, keep_weights=True)
else: print ('No alteration in regularization!')
#%% Summary of models
determine_initial_accuracies = False
if determine_initial_accuracies:
ModelKeys=list(models.keys())
print ('Total number of models = ',str(len(models.keys())))
print ('Initial Train Loss and Accuracy')
TrainEval=[]
for ModelKey in ModelKeys:
Eval=models[ModelKey].evaluate(Dataset_Tr, verbose=0)
TrainEval.append(str(ModelKey)+' : '+str(Eval))
print ('\n'.join(TrainEval))
print ('\nInitial Val Loss and Accuracy')
ValEval=[]
for ModelKey in ModelKeys:
Eval=models[ModelKey].evaluate(Dataset_Val, verbose=0)
ValEval.append(str(ModelKey)+' : '+str(Eval))
print ('\n'.join(ValEval))
print ('\nInitial Test Loss and Accuracy')
TestEval=[]
for ModelKey in ModelKeys:
Eval=models[ModelKey].evaluate(Dataset_Ts, verbose=1) #verbose=0
TestEval.append(str(ModelKey)+' : '+str(Eval))
print ('\n'.join(TestEval))
#%% Training config
def train_model (model, Dataset_Tr, Dataset_Val, initial_epoch=0, final_epoch=5, Model_Path=None, class_names=None):
if Model_Path==None or Model_Path==[]:
Model_Path=model.name
sess_DateTime = str(datetime.now().strftime("%Y%m%d-%H%M%S"))
MdlChkpt_Path = os.path.join(Model_Path,"MdlChkpt",(sess_DateTime+"_e{epoch:03d}_Acc{accuracy:.2f}_ValAcc{val_accuracy:.2f}.ckpt"))
MdlChkpt_cb = tf.keras.callbacks.ModelCheckpoint(
MdlChkpt_Path, monitor='val_accuracy', verbose=0, save_best_only=True, save_weights_only=True,
mode='auto', save_freq="epoch"
)
TensorBoard_Path = os.path.join(Model_Path,"logs",(model.name+'_'+sess_DateTime))
TensorBoard_cb = tf.keras.callbacks.TensorBoard(
log_dir = TensorBoard_Path, histogram_freq=0, write_graph=False, write_images=False, update_freq="epoch",
profile_batch=0, embeddings_freq=0, embeddings_metadata=None
)
EarlyStop_cb = tf.keras.callbacks.EarlyStopping(monitor='val_loss', \
min_delta=0, patience=150, verbose=2, mode='auto',\
baseline=None, restore_best_weights=True)
# ConfMat_Path = os.path.join(Model_Path,"logs",(model.name+'_'+sess_DateTime))
# log_confusion_matrix=callback_ConfMat(model, Dataset_Val, class_names=class_names, logdir=ConfMat_Path, freq=10)
# # Define the per-epoch callback.
# ConfMat_cb = tf.keras.callbacks.LambdaCallback(on_epoch_end=log_confusion_matrix)
PredLog_Path = os.path.join(Model_Path,"logs",(model.name+'_'+sess_DateTime))
pred_writer = callback_PredWriter(model, Dataset_Val, class_names=class_names, logdir=PredLog_Path, freq=5) #freq in epochs
# Define the per-epoch callback.
PredWriter_cb = tf.keras.callbacks.LambdaCallback(on_epoch_end=pred_writer)
history = model.fit(Dataset_Tr, initial_epoch=initial_epoch, epochs=final_epoch, \
verbose=1, callbacks=[EarlyStop_cb, TensorBoard_cb, MdlChkpt_cb, PredWriter_cb], # ,ConfMat_cb
validation_data=Dataset_Val, validation_freq=1)
return history
#%%
FreshTrainHistory = True
if FreshTrainHistory:
history={}
#%% Training non-core layers
# Setting the core model as non-trainable
TrainNonCoreOnly = True
CoreModel_layer = -2
if TrainNonCoreOnly:
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
model=models[ModelKey]
model.layers[CoreModel_layer].trainable = False
model.compile(optimizer='adam',
loss=tf.keras.losses.SparseCategoricalCrossentropy(from_logits=True),
metrics=['accuracy'])
print (model.layers[CoreModel_layer].name,'(core model) has been set as non-trainable and', ModelKey, 'recompiled!')
if TrainNonCoreOnly:
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
print (models[ModelKey].summary())
#%% Training non-core layers
if TrainNonCoreOnly:
Epochs2TrainFor= 2000
Start=time.perf_counter()
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
relevant_his_log=sorted([log for log in list(history.keys()) if (ModelKey+'_') in log])
if len(relevant_his_log)>0:
relevant_his_log = history[relevant_his_log[-1]]
initial_epoch = relevant_his_log.epoch[-1] + 1
else: initial_epoch = 0
final_epoch = initial_epoch + Epochs2TrainFor
ModelStart=time.perf_counter()
print('\nTraining '+str(ModelKey)+' Non-Core...')
Model_Path = os.path.join(MasterPath,str(ModelKey))
model = models[ModelKey]
sess_DateTime = str(datetime.now().strftime("%Y%m%d-%H%M%S"))
history[ModelKey+'_'+sess_DateTime+'_NonCore']=train_model (
model, Dataset_Tr, Dataset_Val, initial_epoch=initial_epoch, final_epoch=final_epoch,
Model_Path=Model_Path, class_names=class_names)
print('\n'+str(ModelKey)+' Non-Core trained! Training time = '+ str((time.perf_counter()-ModelStart)/60) + ' min!')
print('\nTotal training time = '+ str((time.perf_counter()-Start)/(60*60)) + ' hr!')
#%% Summary of Models
determine_accuracies = False
if determine_accuracies:
print ('Total number of models = ',str(len(models.keys())))
print ('Train Loss and Accuracy')
TrainEval=[]
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
Eval=models[ModelKey].evaluate(X_Train,Y_Train, verbose=0)
TrainEval.append(str(ModelKey)+' : '+str(Eval))
print ('\n'.join(TrainEval))
print ('\nVal Loss and Accuracy')
ValEval=[]
for ModelKey in ModelKeys:
Eval=models[ModelKey].evaluate(X_Val,Y_Val, verbose=0)
ValEval.append(str(ModelKey)+' : '+str(Eval))
print ('\n'.join(ValEval))
print ('\nTest Loss and Accuracy')
TestEval=[]
for ModelKey in ModelKeys:
Eval=models[ModelKey].evaluate(X_Test,Y_Test, verbose=0)
TestEval.append(str(ModelKey)+' : '+str(Eval))
print ('\n'.join(TestEval))
#%% Fine training additional layers
# Setting some layers of the core model as trainable
RegularizeTheModel = False
FineTrainCoreLayers = True
Change_DropoutRate = False
New_DropoutRate = 0.8
regularizer = tf.keras.regularizers.l1_l2(l1=0, l2=0.001)
# CoreModel_layer = -2
FineTuneOnwards = {
'Xception':-5,#-7, #-16, #-7
'InceptionV3':-5,#-31,
'InceptionResNetV2':-5,#-19,
'ResNet50V2':-5,#-13,
'DenseNet201':-5,#-9, #-16
'NASNetLarge':0,
}
if Change_DropoutRate:
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
classi_model = models[ModelKey].layers[-1]
classi_model.layers[-2].rate = New_DropoutRate
classi_model.layers[-4].rate = New_DropoutRate
if RegularizeTheModel:
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
core_model = models[ModelKey].layers[CoreModel_layer]
core_model = RegularizeModel(models[ModelKey], regularizer, keep_weights=True)
if FineTrainCoreLayers:
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
core_model = models[ModelKey].layers[CoreModel_layer]
core_model.trainable = True
TrainableLayers_Key = [Key for Key in list(FineTuneOnwards.keys()) if Key in ModelKey][0]
ref_mdl = eval(f'tf.keras.applications.{TrainableLayers_Key}(include_top=False, weights=None, input_shape={core_model.input_shape[1:]})')
i_track=-1
for layer in core_model.layers[:FineTuneOnwards[TrainableLayers_Key]]:
i_track+=1
layer.trainable = False
for layer in core_model.layers[FineTuneOnwards[TrainableLayers_Key]:]:
i_track+=1
layer.trainable = ref_mdl.layers[i_track].trainable
del ref_mdl
print ('Appropriate layers after',FineTuneOnwards[TrainableLayers_Key],'of',core_model.name,'have been set as trainable!')
models[ModelKey].compile(optimizer=tf.keras.optimizers.Adam(1e-7),
loss=tf.keras.losses.SparseCategoricalCrossentropy(from_logits=True),
metrics=['accuracy'])
print (models[ModelKey].name,'has been recompiled!')
if FineTrainCoreLayers:
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
print (models[ModelKey].summary())
#%% Fine-tuning model
if FineTrainCoreLayers:
Epochs2TrainFor= 2000
Start=time.perf_counter()
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
relevant_his_log=sorted([log for log in list(history.keys()) if (ModelKey+'_') in log])
if len(relevant_his_log)>0:
relevant_his_log = history[relevant_his_log[-1]]
initial_epoch = relevant_his_log.epoch[-1] + 1
else: initial_epoch = 0
final_epoch = initial_epoch + Epochs2TrainFor
ModelStart=time.perf_counter()
print('\nTraining '+str(ModelKey)+'...')
Model_Path = os.path.join(MasterPath,str(ModelKey))
model = models[ModelKey]
sess_DateTime = str(datetime.now().strftime("%Y%m%d-%H%M%S"))
history[ModelKey+'_'+sess_DateTime+'_FineTune']=train_model (
model, Dataset_Tr, Dataset_Val, initial_epoch=initial_epoch, final_epoch=final_epoch,
Model_Path=Model_Path, class_names=class_names)
print('\n'+str(ModelKey)+' trained! Training time = '+ str((time.perf_counter()-ModelStart)/60) + ' min!')
print('\nTotal training time = '+ str((time.perf_counter()-Start)/(60*60)) + ' hr!')
#%% Summary of Models
determine_accuracies = False
if determine_accuracies:
print ('Total number of models = ',str(len(models.keys())))
print ('Train Loss and Accuracy')
TrainEval=[]
ModelKeys=list(models.keys())
for ModelKey in ModelKeys:
Eval=models[ModelKey].evaluate(X_Train,Y_Train, verbose=0)
TrainEval.append(str(ModelKey)+' : '+str(Eval))
print ('\n'.join(TrainEval))
print ('\nVal Loss and Accuracy')
ValEval=[]
for ModelKey in ModelKeys:
Eval=models[ModelKey].evaluate(X_Val,Y_Val, verbose=0)
ValEval.append(str(ModelKey)+' : '+str(Eval))
print ('\n'.join(ValEval))
print ('\nTest Loss and Accuracy')
TestEval=[]
for ModelKey in ModelKeys:
Eval=models[ModelKey].evaluate(X_Test,Y_Test, verbose=0)
TestEval.append(str(ModelKey)+' : '+str(Eval))
print ('\n'.join(TestEval))
#%% Saving the latest version of each model
SaveLatestVersions = False
if SaveLatestVersions:
sess = datetime.now().strftime("%Y%m%d-%H%M%S")
for ModelKey in ModelKeys:
print('\nSaving '+str(ModelKey))
Save_Path = os.path.join(MasterPath,str(ModelKey),("LastModel_"+sess))
# models[ModelKey].save(Save_Path)
# tf.keras.models.save_model(models[ModelKey], Save_Path, \
# overwrite=False, include_optimizer=True)
# Save_Path = os.path.join(MasterPath,str(ModelKey),("history_"+sess+'.pkl'))
# with open(Save_Path,"wb") as history_file:
# pickle.dump(history,history_file)
print('\nThe latest version of each model has been saved!')
#%%