# -*- coding: utf-8 -*-

"""

Created on Wed Sep 10 12:15:34 2014

Command line file to be accessed via Main.py

n.b. this is done to solve a memory leak inherant import_FCS_file. Perhaps there is a leak in loadFCS?

@author: ngdavid

"""

from HEADER_Import_FCS import import_FCS_file

from HEADER_ND_Binning import ND_Binning

from HEADER_Generate_HDF5 import Bin_2_HDF5_File

import HEADER_Program_Variables as Prog_Var

import sys

import json

case_num = sys.argv[1]

tubes = json.loads(sys.argv[2])

HDF5_Cases = Bin_2_HDF5_File(Prog_Var.output_file,overwrite=False)

tube,binning = {},{}

for k in tubes.keys():

tube[k] = import_FCS_file(tubes[k],Prog_Var.comp_file,gate_coords=Prog_Var.coords,limits=True,strict=False)

binning[k] = ND_Binning(tube[k],Prog_Var.parameters,bins=10)

HDF5_Cases.push_case(case_num,tube,binning,ordering = Prog_Var.Pattern,saveFCS=False)

print('{} has been pushed to {}'.format(case_num,Prog_Var.output_file))