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snakemakelib

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Snakemake library for all kinds of tasks, with a focus on bioinformatics and next-generation sequencing. See the documentation for more information.

Quickstart

Probably the best way to get started is to run a real example. See the repaper repository for workflows that should work out of the box.

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Snakemake library for bioinformatics programs, with a focus on next-generation sequencing

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  • Python 88.5%
  • HTML 3.9%
  • Makefile 2.6%
  • Batchfile 2.6%
  • Mako 2.2%
  • CSS 0.2%