](https://travis-ci.org/klavinslab/coral){kind=link}
Coral: Core tools for synthetic DNA design. Read the documentation at http://coral.readthedocs.org.
Coral encodes synthetic DNA design rules into its core sequence data types (DNA, RNA, and Peptide), enabling concise, dependable methods for automated DNA design.
Coral works with PyPy so long as a PyPy-compatible numpy is installed.
Most users:
pip install coral
To get the latest on git:
git clone https://github.com/klavinslab/coral.git
cd coral
pip install .
###python (pip-compatible):
numpy
biopython
intermine
optional:
| Package | Added functionality |
|---|---|
matplotlib |
plotting sequencing analysis |
cython |
300 times faster sequencing alignment |
###system:
| Package | Added functionality |
|---|---|
NuPack |
Structural analysis |
ViennaRNA |
Structural analysis |
MIT