Python plugins written at UCI to expand to expand FLIKA (https://github.com/flika-org/flika)
the Parker Lab (https://parkerlab.bio.uci.edu/)
the Pathak Lab (https://www.pathaklab-uci.com/)
Download the plugin folder, move it to the ~/.FLIKA/plugins directory and restart flika. http://flika-org.github.io/plugins.html
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annotator Author: George Dickinson Function:
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centerSurroundROI Author: George Dickinson Function:
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detect_puffs Author: Kyle Ellefsen Function:
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dipoleAnalysis Author: George Dickinson Function:
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fft_Chunker Author: George Dickinson Function:
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fileLoader Author: George Dickinson Function:
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GlobalAnalysisPlugin Author: Function:
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lightSheet_tiffLoader Author: George Dickinson Function:
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light_sheet_analyzer Author: Kyle Ellefsen Function:
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linescan
Author: George Dickinson Function: -
neuroLab_207 Author: George Dickinson Function:
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onTheFly_Reconstruction
Author: George Dickinson Function: -
openCV Author: George Dickinson Function:
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overlay Author: George Dickinson Function:
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packageManager Author: George Dickinson Function:
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puffMapper Author: George Dickinson Function:
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pynsight Author: Kyle Ellefsen Function:
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quantimus Author: Kyle Ellefsen Function:
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rodentTracker Author: Kyle Ellefsen Function:
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roiExtras
Author: George Dickinson Function: -
scaledAverageSubtract Author: George Dickinson Function:
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simulateMEPP Author: George Dickinson Function:
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simulatePuff Author: George Dickinson Function:
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synapse_plugin Author: George Dickinson (adapted from Brett Settle) Function:
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volumeSlider Author: George Dickinson (adapted from Kyle Ellefsen) Function:
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locsAndTracksPlotter Author: George Dickinson Function: Plots positions of tracked particles on tiff stack and provides analysis tools for localization data. Uses positions derived from pynsignt (Kyle Ellefsen), thunderStorm (https://zitmen.github.io/thunderstorm/) or trackpy (http://soft-matter.github.io/trackpy/v0.6.1/).
- Author: George Dickinson (Several of the plugins extended from original code by Kyle Ellefsen and Brett Settle)
- Date: August 23, 2020
- Lab: Ian Parker Lab, McGaugh Hall, UCI