CLI for calculating all atom-atom, residue-residue, and chain-chain interactions in PDB files.
Written for Python 2.7.x. To install dependencies with pip
:
pip install -r requirements.txt
python determine_interactions.py -h
Outputting the entity type (e.g. protein, DNA, RNA, etc) is optional, and depends on
data files generated from https://github.com/harryjubb/pdb_residue_types
.